KEGG T09700: 131879954

Tigriopus californicus (tidepool copepod): 131879954

Entry

131879954         CDS       T09700

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB4-like

K03012

DNA-directed RNA polymerase II subunit RPB4

Organism

tcf Tigriopus californicus (tidepool copepod)

Pathway

tcf03020

RNA polymerase

tcf03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:tcf00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131879954
  09124 Replication and repair
   03420 Nucleotide excision repair
    131879954
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcf03021]
    131879954
   03400 DNA repair and recombination proteins [BR:tcf03400]
    131879954
Transcription machinery [BR:tcf03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     131879954
DNA repair and recombination proteins [BR:tcf03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131879954

SSDB

Motif

Pfam:

RNA_pol_Rpb4 DUF7667

Other DBs

NCBI-GeneID:

131879954

NCBI-ProteinID:

XP_059082417

LinkDB

Position

5:15911957..15912756

AA seq 142 aa
MAANAQENTQGEEDASELVFPKEFEDNETKTLLISEVHILLQHRKQQNESAEEEQEFSEV
FMKTLNYTQRFAKFKNMENIAAIRALLTNKKIHKFELAALANLCPESPEEAKALIPSLEG
RFDDQELASLLDDIQTKRSFQY

NT seq 429 nt +upstreamnt +downstreamnt
atggccgccaatgcccaagaaaatactcaaggggaagaggatgcttccgagttggtgttt
cctaaagagtttgaggacaacgagaccaagaccctcctgatttccgaggttcacatcctt
ctccagcatcgcaagcaacagaacgaatccgccgaagaagaacaagagttctctgaagtc
ttcatgaaaacgctcaactacacacaacgcttcgccaagttcaagaacatggagaacatt
gccgccatccgcgccctcctcaccaacaagaagatccacaaattcgaattggccgccttg
gccaatctgtgtccggagtcgcccgaggaagccaaggctcttattcccagcttagaaggg
cgattcgatgaccaagaactggcctcgctcctcgacgatatccaaaccaaaagaagtttt
cagtattaa

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