Tigriopus californicus (tidepool copepod): 131879978
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Entry
131879978 CDS
T09700
Name
(RefSeq) transcription factor collier-like isoform X1
KO
K09103
early B-cell factor
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131879978
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
131879978
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GFIT
Motif
Pfam:
COE1_DBD
COE1_HLH
TIG
Motif
Other DBs
NCBI-GeneID:
131879978
NCBI-ProteinID:
XP_059082449
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Position
5:complement(5582195..5607384)
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AA seq
595 aa
AA seq
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MMMFGLQESALHPIRGPVLKEEPLGATTTANHLHHAARSWMGAPMALDHGGVAPGIGRAH
FEKQPPSNLRKSNFFHFVIALYDRTGQPIEVERTAFISFIEKDQEIDGIRTSNGIQYRLQ
LLYSNGVRQEQDIYLRLIDSVTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCEKKSCGNR
NETPSDPVVIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISLVPSVEGNLLAVSDNMF
VHNNSKHGRRVKRLDPTEALYPGLYPTSAIPCIKAISPSEGWTTGGSTVIIIGDNFFDGL
QVVFGTMLVWSELVTSHAIRVQTPPRHIPGVVEVTLSFKSKQFCRGAPGRFVYVSLTEPN
IDYGFHRLGKLVPRHPGDPEKLPKEIVLKRAADLAEALYSMPRNNQLAALSAATSPRSPS
QQSVMHHGFNSYTGQLAVTDSTVNGQWSEDDPLCVQSYHQYHQSVTAPTHQALSHTHRLL
NPIATNHSNSSGRNTHSTSPSDCNSSSANGSEGLVPRTNTPTTVASVATPTTAMNATSLS
TFSSAAGNASVSMATAAASHYNHSLFQASSSVVYPFHSYLSQFPNCNWSAFHSQF
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgttcggcctccaggagtcggctcttcatcccattcgaggtccagttctgaaa
gaggaaccattgggtgcaaccaccacagccaatcatctgcaccatgcggccagaagctgg
atgggtgctcccatggccttggatcatggcggggtggcgcccgggattgggcgagcacat
tttgaaaaacagcctccgtcaaatttgcggaaatccaatttcttccattttgtcatagcc
ttgtacgatcgaacgggacaacccattgaggttgaacgcaccgcatttattagctttata
gagaaagatcaggaaatcgatggaattcggacgagtaatggcattcaatatcgactccag
ctgctttactcaaatggtgtcagacaagagcaagacatttatctccgtctcatcgactcc
gtaaccaaacaggccattgtgtacgaaggacaggacaagaatcccgaaatgtgccgagtt
ctcctcactcacgaaatcatgtgcagccgatgttgtgagaagaaatcgtgtggaaaccga
aacgaaacgccctcggaccctgttgttattgaccggttcttcctcaagttcttcctgaaa
tgtaatcaaaactgcctcaaaaatgccggaaacccaagagacatgaggcgattccaggtg
gtaatatcactggttccgagtgtggagggcaacctgttggcggtgtccgataacatgttc
gtccacaacaactccaaacatggacgtcgagtcaaacgactcgatccgactgaagcactt
taccctggtctctatcccacatctgccatcccttgtatcaaagcaatatcacccagcgaa
ggctggaccacagggggatccacagtcattatcattggcgacaacttcttcgatgggtta
caggttgtttttggtaccatgttggtttggagcgagttagtcacgtcacacgccattcga
gttcaaaccccacctcgtcacatcccaggagtggttgaggtcactctgagcttcaaaagc
aaacagttctgccgcggggcccctggacgcttcgtatacgtgtctctgactgaaccaaac
attgactacgggttccatcgcctcgggaagttggttccacgccatcctggagatccagag
aaactgcccaaagaaatagtcctgaagcgtgccgctgacctggcagaggcgctctattca
atgcctaggaacaatcaattggccgcactttccgcagccacaagtcctcgatctccatcc
caacaatcggttatgcatcatggcttcaattcgtataccggtcaattggcagtcacagac
tccaccgtcaacggacaatggtctgaagatgatccactatgtgtccaatcctaccaccaa
taccaccaatccgtcaccgcccccactcatcaagccctgagccacacccaccgacttctc
aatcccatagccaccaaccacagcaacagtagcggacggaacacccattcgacgtccccg
tcggactgcaactcatcctcggccaatggttcagaaggtttggtccctcgaaccaacaca
cctaccacagtggcttctgttgctaccccaaccacggccatgaacgcaaccagtctgtcc
actttctcgagtgcggctggtaacgcaagcgtctccatggccacggctgcggcctctcac
tacaatcattccttgttccaagcctcgtcaagtgttgtgtacccgttccattcgtatttg
agccaatttccaaattgcaactggtctgcctttcattctcaattttga
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