Tigriopus californicus (tidepool copepod): 131880051
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Entry
131880051 CDS
T09700
Name
(RefSeq) nuclear pore complex protein Nup155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131880051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131880051
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131880051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
131880051
NCBI-ProteinID:
XP_059082532
LinkDB
All DBs
Position
5:complement(12143511..12148990)
Genome browser
AA seq
1372 aa
AA seq
DB search
MTLSSVNASAVANTHSGVGHGGVSWHESMEACGRMVEKMLHSDSQCPSLGDKLRCHAPGS
PSGLGAGLSGNHDPDYPAVTAQSAVNAAALRAPSQIRRVPLPAELVEHFGHMQCNCLMGV
FPGVGRAWLTIDSDIYLWRFEDGGDLAYFDGLGDTILSVAWLTPRVGVFKDHIKYLLCLT
TAVEIVLLGVTFGPIPGHEEAEMHLLPEPLFTLATDAVYMMCIAGTAHGRIFMGGKDGCL
YEFVYQAEDGWFGKKAQKINHSNSSLSFLVPSFINAAFYEEDPIEQIQVDESRHILYTRS
EKGNIQVFDLGPEGRDMVKVVAVSQASIVQEAARVAIHIDQSNLTPIIGISVVPMSESPA
LALVAVSGNGVRFYFSVMGNNLMGRPQNLYLQHVRLPPGFSAASNVPRPSKAHMSYYNQG
TLLLVCSQTEESDMLWLLSNDGFPFQNILMEGQTSLPLDGRVWALVEIPGEERMLRLYKD
SFQSMQPPLVVIQHTQIAKRFVLISAQGTIIVSKLRPVDHLRQLLIDHGGPDNEVVKGFF
SLHADAQGIATSLILACSRAIQDRKISEWATRAFFLYGGEPRLSFGQQAPNQAGNQAGRN
VSMAQPFSPSFHPHIASTPAPHNQSAGNVNPFLTPRGDGGFGSQSMFQPELIFSSKHNGL
YLYFSRLVRPLWLATLVVPGSQTTHLASTLTIDEIEWVLTQLCDLKEFMDRNSHMHSGSS
GGVQASMSLGHPHHPHHPGNHLHKSHQEALLKERQSLLFLQQLVSHCQQVIGLWKVVCDH
QVHVVAQKLGQDEQNILRGMYFRDLILSNAGKELSSRLVQAIINLYLADNASTDAISNRL
REVCPALYNTEDAISSKAHEMLITAKSKSNPNERERLLRDAVNMCKDIASRVNLDVLTSH
LAAVHCYWGVVEVCLAAANRRDPQGLALHYYKKSEPMEDQQGHQAFVNRMNCYKHVLEIL
RRLIDTGRAHPMSPSVPKAPGPPPPADPNQLPPQEASEYAENVFQLGLQSEDQLFHIALY
QWLVDHNQFDRLLSIRSSFLEDYLTRGTKRSHETVLMFDLLWKYYEKARSYAAAARILAK
LAERHTVDVALQQRLEYLSRAIMCVKSGEVNGESSRGGVGELLHDLEEKMEVARVQLQIL
DSLNLMDQASPSPNLKTAIDRLNADLLDISQLYQDFAEPYELWECQLAILHCSGHQDKLL
VETVWEHILEKELRQSQDLTNSSRIPMIANKLKALGTLYASAAQRYFPLEFIVRKLEVFS
CQIQSDHTWVFKTLLNVSIPIPKVLEVYNRLYLANEPVWLRQGSPHHLLYVLARLLDTFA
SSPSMVSYNERRQFVVTCLDAVGKYLSNLYTKHDSNLLVSEFKAIQAKLERL
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgtcctcggtcaacgccagtgccgtggctaacacccactccggggtgggtcat
ggaggcgtgtcttggcacgaaagtatggaagcctgtggtcgcatggtggagaagatgctc
cattccgactcgcaatgtccgtccttgggcgataaactccgttgtcacgcccccggctcg
ccttcgggcttgggggcgggtctgtcgggcaatcacgatccggattacccggccgtgacc
gcccaatcggccgtgaatgcggccgcactacgggcgcccagtcagattcgacgggtgcct
ttgcccgccgaattggtggaacatttcggacacatgcaatgtaactgtctgatgggcgtg
tttccgggcgtgggccgggcctggttgaccattgacagcgacatctacctctggcgcttt
gaggatggcggggatttggcctattttgatgggctgggcgataccattctgagtgtggct
tggttaacgccccgagtgggcgtgttcaaggaccacattaagtatttattgtgcttgact
acggccgtggagattgtgctgttgggcgtgacctttggacccattccaggtcatgaagag
gcggagatgcatttgttgcctgaaccattgttcaccctggccacggatgccgtgtatatg
atgtgtattgcgggcacggctcacggtcggatcttcatgggcggcaaagatgggtgcctg
tacgagttcgtgtatcaggctgaagacggctggttcggcaagaaggcccagaagatcaac
cactccaattccagtctctcgttcttggtgccttcgttcatcaatgcggccttctacgaa
gaggacccgattgaacagattcaggtggacgagagtcgccacatcttgtacacacgctcc
gagaagggcaatatccaagtgttcgacttgggacccgagggccgggacatggtcaaagtg
gtggccgtttcccaagcctccatcgttcaagaagcggcccgtgtcgcaatacatatcgac
cagtccaatctgacgccgatcatcgggatctcggtggtgcccatgtcggaatcgcccgca
ctggccttggtggctgtgtcggggaacggcgtgcggttctacttttcggtcatgggcaac
aacttgatgggacgcccgcaaaatctctaccttcaacacgtgcgccttccgcccggattc
tcggccgcctccaatgttccccgacctagcaaagcccacatgagttactacaatcaagga
accttgctgttggtgtgctctcaaaccgaggagtccgacatgttatggctcctctccaac
gacggattcccgttccaaaacatcctcatggagggacagacgagtttgcccctggacggc
cgggtctgggctctggtcgagattcccggcgaggagcgcatgttgagactctacaaggac
tcgttccagtccatgcagcctcctctggtggtcattcagcacacgcagatcgccaagcgt
ttcgtgctgatctcggcccaaggcacgatcatcgtgtctaaactccgtccggtggatcat
ctccgacaattgctcatcgatcacggtgggcccgataacgaagtggtcaagggcttcttc
agcctgcatgcggatgcccaggggatcgccacctcgctcattctcgcctgttcccgggcc
atccaggatcgcaagatctccgaatgggccacccgggccttcttcttgtacgggggcgag
cctcgactgagcttcggtcaacaggcgcccaaccaagcgggcaatcaagcgggtcgaaac
gtgagcatggctcagcctttctcaccctcgttccacccgcacattgcgtcaactccggcg
ccgcataatcagagtgcgggcaatgtgaacccgttcctcacccccagaggagatggagga
tttggatcccagagcatgttccaaccagagttgatcttctcgtccaagcacaacggcctc
tatctgtacttctcgcgtttggtgcgacccttgtggttggccacgttggtcgtcccaggc
agccaaacaacccacttggccagcacgcttaccatcgacgagatcgaatgggtgttgacg
caattgtgcgatctgaaggagttcatggaccgcaattctcacatgcactcggggagctcg
ggaggggtccaggcctccatgtccttgggtcacccgcatcacccgcaccatcctgggaac
catttgcataagtcgcatcaagaggctctgttgaaggaacgccagagtttgctgttcttg
caacaactcgtgtcgcattgccagcaagtgatcggcctttggaaggtggtgtgcgaccat
caagtccacgtggtggcgcagaagctcggtcaagacgaacagaacatccttcgaggcatg
tatttccgcgatctcatcctctccaatgctgggaaggagctcagctccagattggtccaa
gccatcatcaacctttacttagccgacaacgcctccacggacgccatttccaatcgattg
agagaggtctgtccagctttatacaacacggaagacgccatctcgtccaaggctcatgaa
atgctcatcacggccaaatccaagtccaatcccaatgaacgcgagcgcctgcttcgggat
gccgtgaacatgtgcaaggacatcgcgagccgtgtcaatctggacgtgctcacgtcgcat
ttggcggctgttcattgctattggggcgtggtggaggtgtgtttggctgcggccaaccgt
cgcgatccccagggactggctttacactactacaagaagagcgaacccatggaagaccaa
caaggccaccaggccttcgtgaaccgaatgaactgctacaaacacgtgttggagatcctc
cggagactcatcgacacgggtcgagctcaccccatgtctccatccgtgcccaaagccccc
ggacctccccctcccgccgaccccaatcaactgcccccacaagaggcctcggaatatgcg
gaaaacgtgttccaattgggccttcagagcgaagatcagttgttccacattgccttgtac
caatggctcgtggatcacaaccagttcgatcggctcctcagcattcgaagctcattcctc
gaggattatctcacacgaggcacgaagcgatctcacgagaccgtgctcatgttcgatttg
ttgtggaagtactacgagaaggcccgcagttacgcggccgctgcccgcattctggccaag
ttggccgagcgccacaccgtggatgtggctttacaacaacgtctggagtatctttctcgc
gccatcatgtgtgtcaaatccggtgaggtcaatggagagtccagtcgaggaggcgtgggc
gagttgctgcatgacttggaggaaaaaatggaagtggctcgagttcagctccagatcctg
gacagtctgaacttgatggaccaagccagtccttcgcccaacctcaagacggccattgac
cgtttgaatgcggatctgctggacatctcgcagttgtaccaggactttgccgagccctac
gagctctgggagtgtcaattggccatcctccattgctcgggccatcaagacaagctgttg
gtggagaccgtatgggaacacattctggagaaggagctccgacagagccaggatttgacc
aatagctcgcgtatcccgatgattgcgaataaactgaaggccctgggcacgttgtacgca
tcggcagctcaacgatactttcccttggagttcatcgttagaaaactggaggtgttctcg
tgccagatccaatccgatcacacgtgggtcttcaagactcttctcaacgtgtccattcca
atcccgaaagttttggaagtttacaacaggttgtatttagctaatgagcccgtgtggctt
cgccaaggctcgccccatcatttgctctatgttttggcccgacttctggacacctttgcc
agttctccctccatggtgtcttacaatgaaagacgccaatttgtggtcacgtgcttggat
gctgtgggcaagtacttgagtaatctctacaccaaacacgatagcaacctcctcgtcagc
gagttcaaggccatccaagccaaattggaacgattgtaa
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