Tigriopus californicus (tidepool copepod): 131880059
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Entry
131880059 CDS
T09700
Name
(RefSeq) retinoic acid receptor RXR-alpha-B-like
KO
K08526
retinoid X receptor gamma
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131880059
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tcf03310
]
131880059
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
131880059
Nuclear receptors [BR:
tcf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
131880059
BRITE hierarchy
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
131880059
NCBI-ProteinID:
XP_059082541
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Position
5:complement(3940977..3946035)
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AA seq
446 aa
AA seq
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MTLFRGIDDNIDLNGLMDSAGVPATPPNVFGNPQSPLELKPDVSMLLNAPSPASSLGGGS
SSLTHNPPTPRPGSPSVNYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKE
LTYACRENKDCIIDKRQRNRCQYCRYMKCLANGMRREAVQEERNRSGSSASGGNGGGGAA
GSGKGGDNEVESSTGGPPMSDMPIERIIEAENISELGGAFSRKDSDDLQAHMPGGFEGDQ
PNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNEENGILWADS
QFIKRENAHLAGVGDIFDRVLVELVQKMREMKMDKAELGCLRAIILFNPDAKGLEQGPAL
EVENFREKVYATLEEYCRMNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGP
NNSNGADVNDVAAQSLDIFIKEILEE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactttgttccgcggtatcgacgacaacatcgacttgaatggcttgatggacagtgcg
ggcgtgccggccacgccccccaacgtgttcgggaacccccagtctccgctcgagctcaag
cccgacgtgtccatgttgttgaacgccccttcacccgcctcttccttgggaggcgggagt
agtagtttgacgcataatccgcccacaccgcgtccgggctcaccttcggtcaactacccg
cctttgagcgggtccaagcacttttgcagcatttgcggtgatcgagcctcgggcaaacat
tacggcgtttattcctgcgaaggctgcaaaggcttcttcaagcggaccgtgcgcaaggag
ctgacctacgcgtgccgcgaaaacaaggactgtatcattgacaagcgtcagcggaatcgt
tgtcagtattgtcgctacatgaagtgtctggccaatgggatgcgacgcgaggccgtccaa
gaggagcggaaccgcagcggttccagtgccagtgggggtaatggcggtggtggtgccgcg
ggtagcggcaaaggcggtgataatgaggtcgagagctcgaccggtggtccgcctatgagt
gacatgcccattgagcgtattatcgaggccgagaacatctcggagctgggcggggccttc
agtcgcaaggacagcgacgacttacaggcccatatgcccgggggcttcgaaggggatcag
cccaacaaacggaaaatgcttcagcaactggtcgagtgggccaaacacattccccacttt
accgacctcaaaatcgaagaccggatcaagcttattcgcgcgggttggaacgagctgttg
atcgcgggatgcgccttccgctccatgaacgaggagaacggcatcttgtgggcggactcg
cagttcattaagcgagaaaatgctcacttggccggagtgggtgacatttttgaccgggta
ctcgtggagctcgtgcagaaaatgcgggaaatgaaaatggacaaagccgaattgggttgt
ctgcgtgcaatcatcctgttcaatccagatgcaaaagggttggagcaaggccccgctttg
gaagtggagaacttccgagaaaaagtatacgccactttggaagagtattgccgcatgaat
cacgaaaatgaacccagccgttttgccaaactgctcctccgacttccagcattgcggtcc
attggcttgaagtgtgtcgaacatttgttcttctacaagctcatcaaggacgatggaccc
aacaacagcaatggggccgacgtgaacgacgtggccgcccaaagtctggatattttcatc
aaggaaatcctggaggagtga
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