Tigriopus californicus (tidepool copepod): 131880111
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Entry
131880111 CDS
T09700
Name
(RefSeq) serine/arginine-rich splicing factor 5-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131880111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131880111
Spliceosome [BR:
tcf03041
]
Common components
Common spliceosomal components
SR proteins
131880111
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Nup35_RRM_2
SET_assoc
DbpA
RRM_7
Motif
Other DBs
NCBI-GeneID:
131880111
NCBI-ProteinID:
XP_059082607
LinkDB
All DBs
Position
5:2589737..2593883
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AA seq
339 aa
AA seq
DB search
MSTRVYVGGLSHRARERDVEKFFRKYGRIKEISLKNGYCFVEFEDYRDADDAVYECNGKD
VLGERVNVEIARGTPHGRDRERWGTSDRGGGGDRGGSRRDRSPRGGGGGGRDRRESRDSR
GRPVWLEKYGPPTRTDHKVIVENLSSRVSWQDLKDYMRQAGEVTYADAHKNRRNEGCVEF
ANFDDMKTAVEKLDGTELNGRKIKLIEASRRRRSRSDSRSRSRSRSRSRSRSPRRSRTKS
RSKSKSRSRSRSRSGEGVKAKSASRSRSRSRSKELVEEKRDNGKKESRERSASREKSCSR
SRSRSRSPAENGRNYDEKEDDDRADSRTEDRENGDREDD
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccgtgtctatgtagggggtttgagccatcgagcccgggaacgggatgtggag
aagttcttccgcaaatacggccgcatcaaggagatctcactcaagaacggctactgcttt
gtcgaattcgaagactatcgggacgctgacgatgccgtgtacgaatgcaatggcaaggat
gtcctgggcgagagggtaaatgtggagattgcccggggcacgcctcatggccgggaccgc
gaacgttggggtacgagtgaccgaggaggcggcggagatcggggcggaagtcgccgcgat
cgatcaccccgcgggggcggaggtggcggtcgcgatcgccgcgaaagtcgcgactcccgc
ggtcgccccgtttggttggagaagtacggtccgccgaccaggaccgaccataaggtcatt
gtggagaatttgtcgagccgtgtgagctggcaggacctcaaggactacatgcgccaagct
ggagaggtcacttacgccgatgcccacaagaaccgccgcaatgagggttgtgtggagttt
gccaacttcgatgacatgaaaaccgccgttgagaaactggacggaaccgagctgaatgga
cgcaagatcaagttaatcgaagcctcgcgtcgacgccgctctcgatcagatagtaggagt
cggtcccgatccagaagccgctctcgcagtagatctccccgacgctccaggacaaaatct
cgatccaagtccaaatctagatcccgctccagatccagatccggtgaaggagtcaaggcg
aaatcagcttctcgatcccgctcgcgatctcgatccaaggaactggtcgaagagaagcgc
gacaacggaaagaaggaatcaagagagcgatcggcctcccgcgagaaatcctgcagtcgt
agcagaagtcgctctcgatcaccggctgagaatggtcgcaactacgacgagaaagaagac
gacgacagagcggattcgcgcaccgaagacagggaaaatggagatcgcgaagatgattag
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