Tigriopus californicus (tidepool copepod): 131880330
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Entry
131880330 CDS
T09700
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131880330
03041 Spliceosome [BR:
tcf03041
]
131880330
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
131880330
Spliceosome [BR:
tcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
131880330
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_MARF1
RRM_3
RRM_Nup35
Calcipressin
TTHB210-like
DUF4523
Motif
Other DBs
NCBI-GeneID:
131880330
NCBI-ProteinID:
XP_059082916
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All DBs
Position
5:complement(15787353..15868899)
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AA seq
409 aa
AA seq
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MSTLMMPAATMTTMTNTSPIAVTQPKAGANTVAAVVAASDPTAAKMGIINNNKQDHYAIF
VGDLSPEVETHHLRDAFATFGEISDCRVVRDPQTLKSRGYGFVSFATKIEAENAKAVMNG
QWLGSRSIRTNWAARKPPYNRNDANAKPLTFDEVYNQSSPTNCTVYCGGIANGLSEELLQ
KTFAHFGCIQEIRIFKDKGYAFIRFSTKESAAHAIVAVHNTDVNGHTVKCSWGKESGDPN
NLSANSQLSLPQLIPGVPYGIAAGTAPHMAAATAAGFYYPQQVAAQAATNYLQGIQGYAY
NIGASFPQGYISGLPTGIQVGASYGIPSPTSAAAAAVTAAAAAQIPPSQQAALAAQGAAL
QPGVMTGPYPGAATMQQFQTTADDRNSLMKRHAPNHHHHQHHHNAYEWL
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtctactttgatgatgcccgccgccaccatgaccacaatgacgaacacaagccccatt
gctgtgactcagcccaaagctggggcgaacacagtggccgcagtggtggccgcctcggac
ccaaccgccgccaaaatgggtatcattaacaacaataagcaagatcattatgccatattt
gtgggggacctgagtcccgaagttgaaacacaccaccttcgtgacgcatttgcaaccttc
ggtgaaatctcggattgccgcgtggttcgagatcctcaaacgctcaaatctcgaggttac
gggtttgtgtccttcgccacgaagatcgaagctgagaacgccaaggcagtgatgaatggt
caatggctgggatcacgatccatccgaaccaattgggccgccagaaaaccaccctacaat
cgcaatgatgccaatgccaagccgcttaccttcgacgaagtttacaatcagtccagtcca
acgaactgcaccgtgtactgtgggggtatcgccaatggattgtccgaagagcttttgcag
aaaacctttgcacattttggatgcattcaggagatcaggatcttcaaggacaagggttac
gccttcattcggttctcaaccaaggaatccgcagctcatgcaattgtggccgtgcacaac
accgatgtgaatggccatacggtgaaatgttcatggggaaaagagtctggagatccgaat
aacctctctgcaaacagccagctctctctaccccagttgattcccggtgtcccgtatggc
attgctgcaggtacagcaccccacatggcggctgccacggcggccggattctattacccg
caacaggtggccgcccaagccgccaccaattatctgcaagggatccaaggatatgcctac
aatattggagcttccttcccgcaagggtacattagcggtctcccgactggaattcaggtg
ggcgcatcttatggtattcccagtccgacgtcggccgctgcagccgccgtgaccgctgca
gctgccgctcaaattcctcccagccaacaggctgccttggcggctcagggagcggcctta
cagccgggagtcatgacgggtccctatccaggtgcggcgaccatgcagcaattccagact
actgcagatgataggaatagcttaatgaaaagacacgcccccaaccatcaccatcaccaa
caccatcacaatgcctacgagtggctatga
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