Tigriopus californicus (tidepool copepod): 131880698
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Entry
131880698 CDS
T09700
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase theta-like
Organism
tcf
Tigriopus californicus (tidepool copepod)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
POLQ_helical
HTH_61
DEAD
Helicase_C
ResIII
Helicase_dom4_arc
DUF4332
Motif
Other DBs
NCBI-GeneID:
131880698
NCBI-ProteinID:
XP_059083365
LinkDB
All DBs
Position
5:2439451..2502089
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AA seq
2181 aa
AA seq
DB search
MAANPPDSAVGPPPGTPDFEGRGRYLVGPPPPTVPTPARRRSSRLNPEMSPVPINEAPSV
LADLSEDFWDEMSPLRVTPLSKTDPTDPRKMEMGPDTSNAQVARKLQMPMDTLGALSPIV
GNKHRPSGDIDAVSDTPKPPSSPQLDDSEVVPKSPVMKDDSRSVRERRKCIVEHSSLRDS
LTEVEKCELTHWGLPEMVLMRYRQKGISSMFPWQSQCLTIGSVLEGGNLVYSAPTSAGKT
LVAELLLIKRVLESRKKGILILPFVSLAREKMFALQALLQDLPIRVMGFMGSQSPPGGLK
RTDLAICTIEKANGLINRALEDGSLSDIGCVVVDELHLLGDPSRGYLLELLLTKIRYMSF
KEPNCDIQIIGMSATLPNLDLLALWLDADLFKTDYRPVPLTETIKVGNRIFSNQFEFVRS
LKPQVHIENDSDHLVYLCLETILCGHSVLVFCPTKNWCEKLADTVAKAFFQLGRPNPSDM
DLDSREIRAKIQAEIKGKELQEVMEQLKRSPAGLDPVLAKAISFGVAYHHAGLTFDERDI
IEGSFKRGALRVLIATSTLSSGVNLPARRVIVRCPFTFKNQLIDTLSYKQMIGRAGRKGV
DTEGESILFCRENEKDKVMELVSSPLQPVKSCLVHEHSGETIATAMKRALLEVVASGVAT
TPKEVEKYASCTMLSASLTNLCPSSPSQSTETSITGCIQFLEENEFIRLQSSGPEAGHPK
GSNDTRYVPTQLGLACLASSLSPDEGLKVFVELAQARKCFVLENELHILYQVVPIYAAVS
WPNLDWMNFLSLWEGLSPDMKRVGELIGVEERFLVRAMRGTLNQNSVKQAKQMAVHQRFY
TALALHDLVNEIPLRVVSQKYGSSKGMLQSLQQAASTFAGMVTAFCHKLGWFNLELLIGQ
FQDRLQFGIHRDLIDLCRLNTLNGQRARILHNAKVETVAILANSTPNEIETILLNSMPFE
SGRKGEAESDFDANKRKEMRLFWVTGQKGLTVSEASKAVVEEARDVLQKDLGIQIDWDSK
EDRERNLSALMNESETKKNSLKTKKKTGKKSTKTNKVNLKPTTSLSSSKALRARYLQKPQ
FLTSASTSSSSIAASTNGSTKVSPHLFSLQGKPRTQKRMSGSIFDGSVKASRKSLEQVSP
REYCSTPVAPNAGTRTLVRPEASPCVESNGENVVQNSFDVSGQLDEIFRSQMEEATSPSK
PSLGTPLMKIEAHDGGTFSADLFNESSFPLNEIPHNALRPKSNRDLKSNRSCPETPRFEV
CSEELLLRLSPSSEQLDVPHVEDDPISSQGCSKNVEEPARMANFTISDSFLEGAMDTHMS
EGDEVEKTVSCSIVLSSKKTRPIITVRENIEPHPSPQLAWSAVKTPRPLLNPDTPVTPKS
EKSVRLSKRRQIKKGLQGQSRISPGFLIMSDSDSEDISGGPQMSGPPLASQMRDLAIVDV
CSQRTLFETFIQEWNSQTRFSLALACQSESNSNNGKATIIGGKMRKGSLRNTKSNALKSV
DQLRLSSLALKLVGLAISWESTSVFYLRLDPNPENETNNDSLDPPSQDTSLTTNERIQAL
SEVFHGSTNTKRHVTMFDSKAQFKVLYLTLGLLVPPSWLILDPKVGSWMIQPMDKERNLT
NLVMTWDPSSKPVLEYLGSSTGCGSVGLNVEGKNPARLRAVSECLLAWRVMRKLQSELES
IGMWRAFTDVEMPSILTLLQMELNGVGFSEDEAERQRKIIVARMADLEADAYRLAGREFA
LSSSDEICKIQVWDKCDPFARAPTRLRSSKGSPSCNKDILIKLQAYHDLPTLILEWRKLN
MTISKVVGPMMRSKSHHSQLKMDRIYPVCQTLTATGRISLHEPNIQNIPRDFNIPLTERL
KEKALGRRETRLLNSRLSRGSNSSRSILSPLASYLEDPTQASVYKVSMRHAIVPRSGFLI
LAADYSQLELRILAHMSGDEKLCLALNKGHDVFKVIAAAWKRTPIEKISDDERQQAKQIC
YGMIIQVFTVDKSLGEQWVMXEEDASAFIHSFKATYPGIKDFMDKTLIDCRQRGYVETMN
GRRRYLPKVTSGATQFVKAAAERQAINTTIQGSAADLVKRAMNTINERLLKAFPGCRAPF
RESNCSNAINPQSLGLLSTTNGGFFLLQMHDELIYEVSSQDVLQVSQIVRMSMENVCQLK
VKIPVKVKIGPSWGQLQDMKE
NT seq
6546 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaatccgccggacagtgccgtgggcccacccccaggtacgcctgactttgag
ggacgggggcgctatctcgtgggtccgccacccccgaccgtgccgactcccgctcgccga
cgttcttcgaggttgaatccggaaatgagcccagtacctatcaatgaggcaccgagtgtg
ttggctgatttgagtgaggacttttgggatgagatgtcgcccctgcgggtcacgcctctg
tccaaaaccgatcccaccgatccccgtaaaatggaaatgggcccagacacatcgaacgcc
caagtcgctcgcaagctccagatgcccatggataccttaggtgctttatcaccgattgtg
ggaaataagcatagaccttcgggtgatattgacgccgtatcagacacaccgaaacctccc
agttcgccccaactggatgatagtgaagtggtcccaaaatcgcccgtgatgaaggatgat
agtcgttcagtgagagaacggcgaaagtgcattgtggaacattcgagcctacgagatagt
ttgaccgaagtggagaagtgcgaactgacccattggggattgccggagatggttttgatg
cgatatagacaaaagggcatttcttctatgtttccatggcaatcccagtgtctgactata
ggaagtgttcttgaaggaggcaacctcgtgtactcagccccaacctcggcgggaaagact
ttggtggcggaactgttgctgattaagcgagttctcgagagtcgcaagaaaggcatcctc
atcttgccttttgtgtcattggctcgggagaaaatgtttgctctgcaggctttgctgcaa
gaccttccgattcgtgtgatgggtttcatgggatctcaatctccgcctggtggtttgaaa
cgcacagatctggccatatgcaccatagaaaaagcgaacggtctcattaatcgggcctta
gaggacgggtcattatctgatattggatgcgttgtggtggatgaattgcacctacttggc
gacccttcccgtggatatctcctggagctgttactcaccaaaatccgatacatgtcattc
aaggaaccaaactgtgatatccagatcattggcatgtcggccacgttgccaaacttagac
ctcttagccctatggctagatgcggatctatttaaaaccgactatcgaccggttccactc
accgaaaccatcaaagttggtaaccgaattttcagcaaccaatttgaatttgttcgaagc
ctcaaacctcaggtccacattgagaacgactccgaccatttggtttacctctgcttggag
acaatcttgtgtggtcattccgttctggtgttttgtcccacgaagaattggtgcgaaaaa
ttggccgatacggtggccaaggccttcttccaactaggccgacccaatccaagtgacatg
gatcttgatagtcgggagattcgtgccaaaattcaggccgaaataaaaggaaaagaactc
caagaagtcatggaacaattgaaacgaagtccagcgggtttagatcctgtgttggccaag
gccatcagttttggagtggcctatcatcatgctggactaacctttgatgagcgagacatc
attgaaggctcattcaagcgtggtgctcttcgtgtcttaatagccacgtccactttgagc
tcgggagtgaatttgcctgctcgtcgtgtgattgtgcgatgtccttttaccttcaaaaac
caactcatcgatactttgtcttacaaacaaatgattggccgagctggccgaaaaggcgtg
gatacggaaggggaaagtattctcttttgccgagaaaatgagaaggacaaggtgatggag
ttggtctcgtcaccgttgcaaccggtgaaaagttgtctcgtgcacgaacacagtggagaa
actattgcaaccgccatgaagagagctttactggaggtcgtcgcaagtggagtggccacc
acacccaaagaggtagagaaatacgcctcctgcactatgttgtccgcctccttgaccaat
ctttgtccctcctctccatctcaaagcacagaaacttccattaccggatgtatccaattc
ctggaagagaacgaattcattcgactccaatcttctggtccagaagctggacacccaaaa
ggttccaacgacactcgttacgtgccgactcaactgggattagcatgtttggcatcttca
ctctcaccggacgagggactcaaagtcttcgtggaacttgctcaagcaagaaaatgtttc
gttctcgaaaacgagcttcacatcctctatcaggtcgttcccatttatgctgccgtttca
tggcccaacttggattggatgaacttcttgagtctctgggaaggattaagccctgatatg
aagcgcgtgggagaattgattggcgtcgaggaacgctttctggttcgagccatgcgagga
acacttaaccaaaactccgtcaaacaggcaaagcaaatggccgttcaccaaaggttctac
acggccttagctcttcacgatcttgtcaacgaaattccattgagggtcgtctctcagaaa
tacggctcttcgaaaggaatgcttcaaagccttcaacaggcagcatcaacgtttgctggc
atggtgacggcattttgtcataaattaggatggttcaatctggaactcttgatcggacaa
ttccaagatcgacttcaatttggaatacaccgcgatctcattgacctttgtcgtttgaat
accctgaatggacaaagggctcgaatccttcacaatgccaaagttgagactgtggctatc
ctagccaacagcactccaaatgagattgagaccatcctcctgaattccatgccttttgaa
agtgggcgaaaaggtgaagctgagagcgatttcgatgccaacaagcgcaaagaaatgcgg
ttattttgggtcaccggtcagaaaggccttacagtcagtgaggcgtccaaggctgttgtg
gaagaggcccgggatgtgttacaaaaggacctcgggatacaaattgattgggattccaaa
gaggaccgagaacgaaacttatcggcattaatgaacgagagtgaaacaaagaagaactcc
cttaaaaccaagaagaagacgggcaagaaatctactaagaccaacaaagtaaaccttaaa
ccgacgacgtcgttgtcatcttctaaagccttaagggctagatacctgcagaaaccccaa
ttcttaaccagtgcatcgacttcgtcttcttctattgctgcttctacaaacggctcgacg
aaagtgtcgcctcatttgttctcgttgcaagggaaacccagaacacaaaaacgcatgtcg
ggatcgattttcgacgggagtgtcaaggcctcgaggaagtctttggaacaagtttctccg
cgagaatattgcagcactcccgtggctccaaatgcgggcacaagaaccttggtcagacct
gaagcctctccatgtgttgaatccaatggtgagaacgtggtccagaattcctttgatgtg
agtggtcagctggacgaaatctttcggtctcaaatggaagaggcgacgagcccttccaaa
ccaagccttggcactccgttgatgaagatagaagcccatgacggaggtaccttctcggcc
gacctctttaacgaatcaagttttcctttgaatgagattccccacaatgctctgaggccc
aagtctaatcgtgacctcaaatctaatcgctcttgtccggaaaccccacgatttgaagtt
tgctcggaggagctccttttaagactttcaccgagctcggagcaattggacgttcctcac
gtggaagatgatccgatttcatctcaaggttgctccaagaatgtcgaggaacctgcaagg
atggccaatttcacgatatcggattcctttttggaaggcgccatggacactcatatgtca
gaaggcgatgaagtggaaaagacggttagttgttccattgttctttcttcgaaaaaaaca
agaccaataatcaccgtgagggaaaacatagaacctcatccatctccgcaattagcttgg
agtgcggtcaaaactcccagacctttgttgaatccagacactccagtcacacctaagtcc
gagaagtctgtgagattatccaaacgaagacaaatcaagaaaggtcttcaaggccaaagc
cgaattagccccggtttcctaattatgtcggatagtgattctgaggacattagtggtggt
ccacaaatgagtggacccccacttgccagtcaaatgagagacctggcaatagttgatgtg
tgctcacaaaggaccctattcgagacctttatccaggagtggaactctcaaacgaggttt
tcgttggcacttgcgtgtcagagtgaatcgaattcaaacaacggaaaagctacaatcatc
ggaggcaaaatgaggaaaggtagccttcgaaacactaaaagcaatgctctcaagagtgtg
gatcaattacgtttatcctctcttgcactgaaattggtcggactagcaattagttgggaa
tctacaagtgtattctaccttcgattggatcctaatccagaaaatgagaccaataacgac
tcgcttgacccgccgagtcaagacacttcactaaccactaacgagagaatccaagccttg
tccgaagtgttccatggatccacgaataccaaaagacatgtcaccatgttcgattccaag
gcgcaattcaaggtcctttatttaaccttgggcctacttgtcccaccttcatggctcatc
ttggacccaaaagtgggttcctggatgatccaacccatggacaaggaacggaatctcacc
aatctagtcatgacttgggatccgagctcgaaaccagtcctcgagtacttgggctcttcg
accggttgcggaagcgtgggattgaatgtggagggaaagaatcctgctcgtttgagggct
gtgagcgaatgcttactagcctggcgagtgatgcgaaaacttcagagcgaattggaatcc
attggcatgtggagggccttcacagacgtggaaatgccttccatccttaccttgctccaa
atggaactcaacggcgttggcttttccgaagatgaggctgagcgccaaaggaagatcatt
gtggccagaatggccgatctcgaggcagatgcatacagattggcgggtcgggaattcgca
ttatcatcgtcagatgagatttgcaagatccaagtttgggacaaatgcgatccattcgct
cgagcacccacaagattaagaagttcgaaaggatctccttcttgtaacaaggacattctc
atcaaattgcaggcttaccacgatttgcccacacttattctcgagtggcgaaaactcaac
atgaccatatccaaggtcgtgggacccatgatgcggtccaaatcccaccattcccagtta
aaaatggaccgcatctatccagtttgccagacgctcacagcaacgggaagaatcagtctt
cacgagcctaatatacaaaacattcccagggatttcaacataccattaacggaacgattg
aaggaaaaagctttaggacgtcgagaaaccagactcctcaattcccgattaagccgaggt
tccaattcgtcaaggtcgattctatcgcctttagcctcgtaccttgaagaccctactcaa
gcttcggtttataaagtcagcatgagacatgccatcgttcctcgatctggttttctcatt
ttggccgccgattactctcaattggagctcaggatcttggcccatatgagtggtgacgag
aagttgtgtctcgcccttaataaaggtcatgatgtgttcaaagtgattgcggccgcttgg
aaacggacgccaatcgaaaagattagtgacgacgagcgacaacaagccaagcagatatgt
tatggtatgattatacaggtatttacggtagacaagtctctgggagagcagtgggttatg
nnggaagaggacgcctcggcctttatccactctttcaaagctacttaccccgggatcaag
gactttatggacaagaccttgatcgattgccgacagagaggctacgtggaaaccatgaat
ggccgccgacggtacctgcccaaagttaccagtggggccacccaatttgtcaaggctgcg
gctgaacgtcaagctatcaacacgaccatccaaggctccgctgccgaccttgtcaagagg
gccatgaacactattaatgaaaggctcttaaaggcctttcctggatgtcgtgctcccttt
agggaatccaattgttccaacgccatcaacccacaatctctcgggttactttcgacgaca
aacggaggtttctttcttctacaaatgcatgatgaactgatttacgaggtttccagtcaa
gatgtacttcaggtttctcagattgttcggatgtccatggagaacgtatgtcaactcaaa
gtcaaaatacccgtcaaagtcaagattggtccttcttggggacaattgcaagacatgaag
gaataa
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