Tigriopus californicus (tidepool copepod): 131880842
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Entry
131880842 CDS
T09700
Name
(RefSeq) pseudouridylate synthase 1 homolog
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcf03016
]
131880842
Enzymes [BR:
tcf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
131880842
Transfer RNA biogenesis [BR:
tcf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
131880842
Prokaryotic type
131880842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
131880842
NCBI-ProteinID:
XP_059083540
LinkDB
All DBs
Position
5:complement(15157381..15178614)
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AA seq
448 aa
AA seq
DB search
MSGWGLRILNGTSTWRSPLGSFLLHPRPGLIRLRALATIMSDEVSPIVKSPVEEEPKAEY
PWRKAKKVACLVSFSGINYYGMQRNPSCPTIEEELLRAFRDAGAIPSEWYDNMQKSFFQR
ASRTDKGVSAIKMIISLKMLHENDTLTKVNAELPPAIRLQGVKRSDQEFQLESQLRCPDV
PLPDAHFCGLSVGTDRDRAVPLLTWTTRSQMNKIVGTSLVGSHYYHNYTAGKLPMEPSSL
RFITEFEAGEPFEQSGLEFVVIKVKGQSFMLHQIRKMIGMMISVMRGYTTEATIEATWAK
DRIDIPRAPGLGLMLNEVHYERYNKRFGSDGIHEALTWDELQDDLESFKKDVIFADIIQT
EKEERSMLDWMENLPIHSFEPRHFESVDSPRNPLRQAKGLVGKLNDKDAEEDEQLQKEQN
GVGHDADDVFEEANTDPKGKEKCEVAEI
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtggggccttcgaattttgaatgggacctctacttggcggtcccctctaggt
tccttcttgcttcatcctcgtccaggtctgattcgtctccgagctttggccactatcatg
tccgatgaggtgtcgcccatcgtaaaatctcctgttgaggaggagcccaaggccgaatat
ccttggcgcaaggctaagaaagtggcctgtttagtgtccttcagtggtataaactattac
ggcatgcaacggaacccgagttgtcctaccatcgaagaggaactgctgcgggcctttcga
gatgcgggcgctattccatcggaatggtatgacaatatgcagaaatcgttcttccaacga
gcctcgcgaactgacaaaggtgtctcggccatcaaaatgatcatatcccttaagatgctg
catgaaaacgacaccctcacgaaagtgaatgcggagttaccacccgccattcgtctccaa
ggggtgaaacgtagtgaccaagaatttcaactcgaaagtcagttgcgatgcccggacgta
cctttacctgatgcccacttttgcggtctgtccgttggaacagaccgtgaccgagcagta
ccgctattgacgtggaccacccgctctcagatgaacaagatagttgggacttctttggtg
ggatcgcattactaccacaactacacggccggaaaattgcccatggagccctcgtctctc
agatttatcaccgagtttgaggctggtgagccatttgaacaaagtggcctggaatttgtc
gtgataaaggtcaaaggccagagtttcatgctgcaccaaattcgcaaaatgattggaatg
atgatctccgtgatgcgcggctacacaaccgaagcgaccattgaagccacatgggccaaa
gatcgcatcgatatcccaagggcgcctggtttgggtctcatgctcaacgaggttcactac
gaaaggtataacaaacgctttggctcggatggcatccatgaagctttgacttgggatgag
ctacaggacgacttggaatcgtttaagaaagatgtcatcttcgccgatatcattcaaact
gagaaagaggagaggtcgatgttggattggatggagaaccttcctattcattcgtttgaa
ccgaggcattttgaatccgtggattcgcccagaaaccctctgaggcaggccaaaggtctt
gtgggcaaactcaacgataaagatgcggaagaagacgagcagttacagaaagagcaaaat
ggagttggtcatgatgccgatgatgtgtttgaagaagctaacacagacccaaaagggaag
gagaaatgtgaagtagcggaaatttaa
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