Tigriopus californicus (tidepool copepod): 131881171
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Entry
131881171 CDS
T09700
Name
(RefSeq) thyroid hormone receptor beta-A-like
KO
K08362
thyroid hormone receptor beta
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04080
Neuroactive ligand-receptor interaction
tcf04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
131881171
04081 Hormone signaling
131881171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131881171
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tcf03310
]
131881171
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
131881171
Nuclear receptors [BR:
tcf03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
131881171
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
131881171
NCBI-ProteinID:
XP_059083934
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Position
5:complement(12640624..12642190)
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AA seq
418 aa
AA seq
DB search
MAQDSTFDLVQEIANFIDNYEFQNSRTHLDSEGSSSTSSDSWSRRVCQVCGDDAGQHNYY
GGQSCSGCRAFFRRIVQREIQAFLTCVEGSQECKIDKTTRRRCQFCRFHRCLSIGMRPGW
VLSDHERERRYQKSSSGSKAGSMVSRTSPKSGRMSLLVLTTNDNTHITAHMKMMDEHFTA
SMDAVCEQKQDFIKKMAVMSYFGGQSDFEFYQEFYSLCDNFVFQVMGSVPEFRSLPLQDQ
QELVRVNGQYMVALKYAVSLYETDWCFVYFLEKALRSGKFPYLNEFAQELDAFGMSEHKP
RLMYSQVFSSPWAASAADEARHFSLVNKMQSWPRKDKLDPVDDVQMNLLKLIILFSSEFV
NLQRRDIVEQAQMKFIGLLQKYMKFRYGSEAGVRLGNGLMILSYAKETIDIQKRRIRI
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagacagcaccttcgatctcgtccaagaaatcgccaattttatcgacaactac
gagttccaaaactcaaggacacatctagactccgaaggatcctcttcgacatcgtcagat
tcgtggtcgcgaagagtctgtcaagtttgtggagatgacgctggacaacacaattattac
ggtggtcaaagttgctccggatgtcgtgctttctttcgaagaattgtccaaagggagatt
caagcctttttgacttgcgtggagggatcccaagagtgtaaaatcgacaaaactacccgt
cgcagatgtcaattttgccgttttcatcggtgcttgtccatcggcatgagacctggttgg
gttctttcggatcatgaacgcgaacggagatatcaaaaaagttccagtggatcaaaagcg
gggtcaatggtgtctcggacatcacccaaatctggccgaatgtctttgttggtactgaca
acaaatgacaacactcacatcacagcccatatgaaaatgatggacgagcacttcacggca
agcatggatgctgtttgtgagcaaaaacaggatttcattaagaaaatggcggtgatgagc
tactttggtggacaaagcgatttcgaattctatcaagagttctattcactctgcgacaac
ttcgttttccaagttatgggctctgtcccagaatttcgaagtttgccgcttcaagatcaa
caagaactggtcagggtgaatggacaatatatggtagcgctcaaatatgctgtatcctta
tatgaaaccgattggtgttttgtctattttctcgagaaggcattgagatctgggaaattt
ccatacctcaatgagtttgctcaagaacttgacgctttcgggatgtctgagcataaaccc
agactaatgtacagtcaagtgttctcgtcaccttgggcagcaagtgcagcagatgaggcc
agacacttttcattggtgaataaaatgcaatcctggccacggaaggataaacttgatccc
gtggacgatgtacagatgaaccttctcaagctaataattttgttctcaagtgaatttgtg
aatcttcaacgtcgggatattgtggaacaggcccaaatgaagttcattggattgctccag
aagtacatgaaattcagatatgggtcggaggcaggtgttcgcctgggaaatggtctcatg
attctatcctatgccaaggagactatcgatattcagaaaagacgcatccgaatttga
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