Tigriopus californicus (tidepool copepod): 131881201
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Entry
131881201 CDS
T09700
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcf03009
]
131881201
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131881201
Ribosome biogenesis [BR:
tcf03009
]
Eukaryotic type
90S particles
Helicases
131881201
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
131881201
NCBI-ProteinID:
XP_059083972
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All DBs
Position
5:complement(12936329..12940984)
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AA seq
809 aa
AA seq
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MSAATSRAAPGGIKVDLSGKKAKKILAQKWNKKKRPKKTVLEGQEISQLEIKVKRKLDAQ
SVQTFLDLPISRLTTKGLKDSGFTRPTAIQTQSLLYSLGGQDVLGASKTGSGKTLAFLIP
LIEKLYRLKWTKMDGLGALVITPTRELAYQIFEQLRDVGRHHDFSAGLVIGGKDLHFESR
RMGECNIVICTPGRLLQHMDENPQFDASTMKMLVLDEADRCLEMGFADQMNAIVNNLPLD
RQTLLFSATQTRSIKDLARLSLQNPVFVSVHEHSAKATPDQLQEYYIVCDLAQKMSMLWS
FVKNNARKKILVFVQCCKQAKYFTELFRRLRSPTQITALYGTLNQLRRMAIYKEFCEAER
GVLIATDIAARGLDFPTVDWVLQLDCPEDWKIYNHRVGRTARNAATGSALLVLMPSEEES
MMKQLRAHKFTIVREEVNPHKLLNIQRKIQANLASDTELKETAKRAFQHYIKSIYLMKDK
TVFDVFALDVDAFAVSLGLAAAPRIPFLEKHMRIQAAKRRKEKLQETQTEESVDNIPQSK
EKDKMRLMDSSEDEDGEDVITMKRKDHAIGNNDSEDDGHDLLPLLGRGSSKVVTKAAAVK
KALKKNIQLNQKVKFDDDGGAHEDDPAIQPKASKEGQLYEGNESSEKPGGGIDIEKAKMV
LKAEDAFDRKTERARIKEVHKEKKRKEKELKNKRRKEQEGEAGEDQDSEEEDEDVEDEEE
EDGKEPNLDWLPDPDEIYGKKKSESSDSEGEEDSSSEDESGSKRKWKPPKKPKTDPSKRA
RVDWEESSDDEDLEQLHDNEALALQLLGN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgccacatcccgcgccgccccagggggcatcaaggtggatctcagtggaaaa
aaggccaaaaaaatcctggctcagaagtggaacaagaagaaacgacccaaaaaaactgta
ttggagggccaggagatttctcagttagaaatcaaagtgaagaggaaactcgatgcccaa
tctgtccagacctttttggacctgcccatatctcgtttgaccaccaaaggcctcaaggat
tcgggtttcacccggcccaccgccattcagacccaatcgctcctgtattctttgggcggg
caggacgttttgggtgcctccaaaacgggttcaggcaagactttggcctttctcatcccg
ctcattgagaaactctatcggctcaaatggacgaaaatggatggattgggcgctttggtc
atcacacccacccgcgaattggcctatcaaatctttgagcaattgcgcgatgtgggccga
catcacgatttctcggccggtttggtgattggcggcaaggatcttcatttcgaatcgcgg
cgaatgggcgagtgcaacattgtgatttgcacgcctggacgccttctgcaacacatggac
gagaatcctcaattcgatgccagtactatgaagatgttggtactagatgaagctgatcgt
tgcttggagatgggatttgccgatcaaatgaacgccatagtcaataacttgcctctggat
cggcaaaccctgctattttccgccacccaaacccgatccatcaaagatttggcacgtttg
agtctgcagaatccagtgttcgtctctgtgcatgagcactcggccaaagccacgccggat
cagcttcaggaatattacattgtgtgtgatttggcccaaaagatgagtatgttgtggtcg
tttgtgaagaacaacgcgcggaagaagatcctggtgtttgtgcaatgctgtaaacaagcc
aaatacttcacggagctcttccgaaggctccgatcacccacccagatcacggctttgtac
ggcactttgaatcaattaagacgcatggccatttacaaagaattctgtgaagccgagcgc
ggggtgctcattgccactgatatcgcagctcgaggcctagattttcctacggtggattgg
gtacttcaactcgattgtccagaggattggaaaatttataaccacagagtgggacgcacg
gctcgaaatgcggccactggatcagccctactcgtcctcatgccttcggaagaggaatca
atgatgaagcaattgcgggcccataaatttacgattgttagggaggaggtaaatcctcac
aaactgctaaatatacaaaggaagattcaggccaatttggccagcgacaccgagttgaaa
gagacggcgaaaagagctttccagcactacattaagtcgatttacttgatgaaggataag
accgtgtttgatgtgtttgctttggatgtggacgcatttgcagtctccctgggtttggca
gcagctccgcgaatccctttcttagagaagcatatgcggatccaggcagccaaacgaagg
aaagagaagctccaagaaactcaaactgaagaatctgtggataatattcctcaaagcaaa
gagaaagataaaatgcgtctaatggactcgtctgaagatgaggacggcgaagatgtaatt
accatgaaacgaaaggatcacgccattggaaataatgattcagaggatgacggacacgac
cttctgcccctcttgggccgaggatcgtccaaggtggtgacaaaggctgctgccgtcaag
aaggcgttgaagaagaacatccagttgaatcaaaaagtcaaatttgatgacgatggtggg
gcccatgaggatgatccagctattcaacccaaagcctccaaagagggtcaattgtacgaa
ggaaacgagtcctcggagaaaccaggcggtggcattgatattgaaaaggcaaaaatggtc
ttgaaagccgaggacgcattcgatcgaaagaccgaacgcgctagaatcaaggaagtacac
aaggaaaagaagaggaaagaaaaggaattaaagaacaaacggaggaaagagcaagagggt
gaggcgggcgaagatcaggattcagaagaagaagacgaggatgttgaagacgaagaggag
gaagatggtaaagagcctaatttggattggttgcccgatccagatgagatctacggcaag
aagaaatcagagtccagtgattccgagggcgaagaggattcctcgtccgaagatgaaagt
ggatccaaacggaaatggaagccgccgaagaagcccaaaactgatccttcaaagagagcc
cgagtggactgggaagagagcagcgacgacgaagatctcgaacaattacatgataatgag
gctctggctctccaactccttggtaattga
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