Tigriopus californicus (tidepool copepod): 131881337
Help
Entry
131881337 CDS
T09700
Name
(RefSeq) mismatch repair endonuclease PMS2-like
KO
K10858
DNA mismatch repair protein PMS2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03430
Mismatch repair
tcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131881337
03460 Fanconi anemia pathway
131881337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131881337
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
131881337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
CIS_tube
Kazal_C6
Motif
Other DBs
NCBI-GeneID:
131881337
NCBI-ProteinID:
XP_059084160
LinkDB
All DBs
Position
1:12748491..12751750
Genome browser
AA seq
752 aa
AA seq
DB search
MVVLNQDFHTSHRLTRTGPTFVRNRKAYAMNTNTKRLSHRPSSHGPSIQRVDLDTVHRIC
SGQVVLTLSTAVKELVENSLDAGAQAIEVKLTNHGLGRIEITDDGHGIPPENFQALTLKH
HTSKIQAFHDLESVGTFGFRGEALSSLCALSHLRVNTRHSSQSLGCDLTFDAQGTLTQTE
SIVRNLGTSVILEGLFEPIPVRRKEFERNIKREFAKMIHILQAYCLISTGVRFFATNSIK
DKKRTIAHTSGNASLKDNIVDVFGSRHFQSLLPIKAKSPSPEELESFEILDLEQEPELKL
EGFISSCSHGSGRSSTDRQFYFINHRPCDPTKIAKLVNDVYHQFNRHQYPFVVLNIQLPR
ESVDINVTPDKRQLLLEREKYLLATLQASLKAMFARIPAEIETVSRFIEKRPSRESSEKI
NLQSTITVCRDNCSLKRSSQSSKSLPLKQMKLESVTKQTPPAVQIDKKGSELHSEAPSAE
ISEEKRIVIEIEDHGQKPKQRRSIQAQFCPDLSTRNLQFKWDRKKEAQASSQSGKFRSFL
AKIAPEDNSQAEQELARHFDQGNFKEMQILGQFNLGFIITRYADDLFIVDQHASDEKYNY
EKLQKANILESQNMVVAQPLALSASDEGILLDNLDVFEKNGFEFEIDLEATHDRIKLTRI
PHYRNWIFGQSEVEELIFMLTDAPPEKRLCRPSRVQAMFASRACRTSVMIGTALNAHELR
RIVYHMGEMDQPWHCPHGRPTMRHLINLNMIQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggttgttctcaaccaagatttccacacttcccaccgacttacacgcactggtccgaca
ttcgttcgaaatcggaaagcctatgcgatgaacaccaacacaaagaggctgagccacaga
ccaagttcccacggcccatccattcaacgcgttgatttggacaccgttcatcggatttgc
tccggacaggtggttctgacgttgagcacggctgtaaaggagctcgtggagaatagttta
gacgcgggcgcccaagccattgaggtcaaactgaccaatcacggactcggtcgcattgaa
attacggatgacgggcatgggatcccacctgagaactttcaagccttgactttaaagcat
cacacctccaagattcaggccttccatgatttggaatccgtgggtacttttggttttcga
ggcgaggccttgagttcattgtgcgccttgagtcatcttcgggtgaacacgcgtcactcg
tctcagagtctgggctgtgacttgacctttgacgcacaaggcaccttaacgcagacggag
agcattgtacgcaatttgggcacatctgtcatcctggaggggctctttgagcccattccg
gtgcggcgaaaagaattcgaaaggaatattaaacgggaattcgccaaaatgattcatatt
ttacaagcctattgcttgatatccaccggcgtcagattcttcgccaccaattcaatcaaa
gacaagaaacgcacgatcgcccacacatccgggaatgcatcgctcaaagataatatcgtg
gatgtgttcgggagtagacacttccaatcccttctgcccatcaaggccaaatcgcccagt
ccagaagagttagagtcgttcgagattctggatcttgagcaagaacccgaattgaaattg
gagggcttcatctcctcgtgttcccatggctcgggtcgttcatcgacggatcgacagttt
tatttcatcaaccaccgaccttgtgatcccaccaagattgccaaattggtcaatgatgtt
tatcatcagtttaaccgacatcagtatcctttcgttgttttgaatattcaactgcccaga
gaatccgtagacattaatgtgacaccagataagcgtcagttgctcttagaacgtgaaaaa
tatctcctcgctacccttcaagcctccttgaaggccatgtttgcccggattcctgccgaa
attgaaaccgtaagccgatttattgaaaagcgaccgtctcgagaatcttccgagaaaatc
aaccttcagagcaccataaccgtttgcagagacaactgctcgcttaaaagatccagtcaa
agctccaaaagcttgcctttaaaacaaatgaaattggaatcggtaacaaagcaaacaccg
cccgcggttcaaatcgataaaaaaggttcagaattgcattcagaagccccctccgcggag
atttcagaagaaaaacgaattgtgatagaaatcgaggatcacggacagaagcccaaacaa
agaagatcaattcaagcgcagttttgtccggatctgtcgaccaggaacctccaattcaaa
tgggaccgcaaaaaggaggctcaggcgtcttctcagtcgggaaagtttcgctcatttctg
gctaaaatcgcgcctgaagataactcgcaagctgaacaagaactggcccgccatttcgac
caaggcaatttcaaagagatgcaaatcctgggccaattcaatctcggtttcatcatcacc
cgctacgctgacgaccttttcatcgtggatcaacacgcatcggacgaaaagtataattac
gaaaagctacaaaaggccaatatcctcgaatctcagaacatggtggtcgcccaaccactc
gcactctcggcctcagacgaaggtattctcctggataatctggacgttttcgagaagaac
ggcttcgaattcgagatcgacctcgaagctacccatgaccgcatcaaactcactcggatt
ccgcattaccgcaactggatctttggccaatccgaagtggaagaactgatattcatgctc
acagatgctcccccggaaaagcggttatgtcgacccagtcgggtgcaggcaatgttcgct
tcacgggcttgtcggaccagtgtcatgatcggaactgcattgaatgcccacgagttgaga
cgcatcgtgtatcatatgggtgagatggatcaaccgtggcattgcccgcacgggcgaccc
acgatgcggcatctaataaacttgaacatgattcaataa
DBGET
integrated database retrieval system
