Tigriopus californicus (tidepool copepod): 131881557
Help
Entry
131881557 CDS
T09700
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131881557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131881557
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131881557
Spliceosome [BR:
tcf03041
]
Complex C
Other components
Step II factors
131881557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Microtub_bd
T2SSE
SRP54
AAA_7
Flavi_DEAD
Sigma54_activ_2
cobW
AAA_30
PduV-EutP
Beta-prop_SPT8
ABC_tran
Motif
Other DBs
NCBI-GeneID:
131881557
NCBI-ProteinID:
XP_059084428
LinkDB
All DBs
Position
6:10765204..10770658
Genome browser
AA seq
1225 aa
AA seq
DB search
MGLSSPNLSLLVNTNVGIRIDYPYHPPSSPSSKMSGDSIHRLEATQMRGGLVIMKKKSTE
DTPTDKTSSLFTQPSAPTSMLGLDRLAAQREKERQEMVEKLKEKEREIENKRREEEEREA
FKRSKAREGERRLRAPQEETPTYTGGVSLAAKERQRRREREEKDRKRKAGDRERDHRDRR
GHHSERRSRRDRERDWEEETPRRREPRDEDTPLLVRPRDTPVRGWDEDEDGTPSKYSTWD
RDTPSIDGRDREDYLNSARSSKSRRHHRYEKETPLPTPSYKKNDWMRKGGRGRSPPDRRS
EKTPIMEEDVQAWEEEQKRLDREWYGLDEGFDEAKDPFGMSQEYTEKKEEAMEAKKVKRM
TAKQAQRNKDNELWEKNRMFRSGAVLRTDHDEDFDEISEAKVHLLVHNIIPPFLDGRIVF
TKQQEPVIPIKDPTSDMAMVSKKGSRLVKIHREQAERKKAQKKEWELAGTKMGDILGIKK
QDDGEAKEMDDNMDYKENQKFADHMKVDQEQKSEFSKRKTLKQQREFLPVFAVRQQLLNI
VRDNSVIIIVGETGSGKTTQLTQYLHEEGLTKYGMIGCTQPRRVAAMSVAKRVADETGTE
LGEEVGYSIRFEDCTSEKTMIKYMTDGILLRESLREPDLDHYSAIIMDEAHERSLNTDVL
FGLLRSVVSRRSDLKLIVTSATMDSQKFADFFGNVPVFKIPGRTFPVDVLYSKATVEDYV
DAAVKQSIQIHLTGNEGDMLIFMPGQEDIEVTCEQIKERLAEVEDAPGLAVLPIYSQLPS
DLQAKIFQKAPDGLRKCVVATNIAETSLTLDGIMYVVDSGYCKMKVFNPKIGMDALQIFP
VSQANANQRSGRAGRTGPGTCYRLYTDRQYREDLLATTVPEIQRTNLANVVLLLKSLGVE
NLLQFHFMDPPPEENILNSMYQLWILGALDNTGQLTRLGKKMVEFPLDPSLSKMLIISEE
MGCSLDILIIVSMLSVPSIFFRPRGREEDSDAAKEKFQVPESDHLTYLNVYHQWKSNRYS
GQWCAEHFIHVKAMRKVREVRAQLKDIMEQQKMKLSSSGTDWDIIRKCICAAFFHQAARL
KGIGEYVNTRTGVPMHLHPTSALFGMGFTADHIVYHELVMTTKEYMQCVTAVDGYWLAEL
GPMFFSVKETGKSRGEKRKVATEHLKTMEREMKEAEEELKRRKTFEEEQAEKERNRVAIA
TPGRSSSTGESGGKTPRRTPHRFGI
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgggtttatcttcgcccaacctctctctattggtaaacacaaacgttggaatccggatt
gactacccttaccacccgcccagctcgccctcatccaagatgagtggcgacagtatccac
cgcttagaggccacccaaatgcgcgggggtctcgtgatcatgaagaagaagtcgaccgaa
gacacgcccaccgacaagacctcctccctcttcacccaaccttcggcgcccacctccatg
ctcggtttggaccgtttggccgctcaacgcgaaaaagagcgccaagaaatggtggagaaa
ctgaaagagaaagagcgggaaattgaaaataaacggcgggaagaagaggaaagggaagca
ttcaagcggagtaaagccagagaaggtgagcgtcgcctgagagcgccgcaagaagaaaca
cccacatatacagggggcgtgtccttggcggcgaaggaacggcagaggcggcgagagagg
gaagaaaaggatagaaagcgaaaggctggggacagggagagagatcacagagatagacga
ggacatcattcagagcgaaggagtcgacgcgatcgtgagcgagattgggaggaagaaacc
cctcgccgacgagagcctcgtgatgaagacacgcctttattggttcgaccccgcgataca
cctgtaaggggttgggatgaagatgaagatggcacgccctccaaatatagtacctgggat
cgagacacaccttcgattgatggtcgagatcgggaggattacctcaactccgcgagatcg
tccaagtcgagacgtcatcatcgttatgaaaaagaaacgcctttgcccacgcccagttac
aagaagaacgattggatgaggaaaggagggcgtggtcggtcccctccagataggcggagt
gagaaaacacccataatggaagaggatgttcaggcttgggaggaggagcaaaaacgatta
gatcgggaatggtacggtttggatgaaggctttgatgaggccaaggatccatttggcatg
agtcaagagtacacggaaaagaaagaagaggccatggaggccaagaaggtcaaacgaatg
acggctaaacaagctcaaaggaataaggacaacgaattgtgggagaaaaatcgcatgttt
aggtcaggagcagtcttgcgaacggatcatgatgaagattttgatgagatcagtgaggct
aaggtccatctgttggtccacaacatcatcccacctttcttggatggtcgcatagtgttt
accaagcaacaagagccggtgatccccatcaaggatcccacctctgatatggccatggtg
tccaagaaaggttcgagattggtcaagattcatcgggaacaagccgagcggaaaaaggcg
cagaagaaagagtgggaattggctggcaccaagatgggcgatatcctcgggatcaagaaa
caagacgacggcgaggccaaagaaatggatgacaacatggattacaaggaaaatcagaag
ttcgcagatcacatgaaagtggaccaagagcaaaagagcgaattttcaaaacggaagacc
ctcaaacaacaacgtgaattcttgcctgtcttcgccgtccgtcagcaactcctcaacatt
gtacgtgacaacagtgtcatcatcatcgtgggtgagacaggctctggcaagaccactcaa
ttgactcaatatctccatgaagagggtctaaccaagtacggaatgattggttgtactcaa
cctcgtcgtgtagctgccatgtccgtggctaagcgggttgccgacgaaactgggaccgaa
ttgggtgaagaggtgggttactccattcgtttcgaggattgcaccagtgagaagaccatg
atcaagtacatgaccgatggaattttgttgagggagtccctcagggaacccgacttggac
cactattccgccattattatggacgaggcccacgagaggtccctgaatacagacgttctg
tttggactgctcagatccgtggtgtcacgacgctctgacctgaaactgattgtcacatct
gcgacgatggattcgcagaagtttgccgatttctttgggaacgtgccggttttcaagatt
ccgggaaggacgtttcctgtggatgtgctttatagcaaggccacagtggaagattatgtg
gacgctgccgtgaagcaatccattcaaattcatctcaccggtaacgaaggggacatgttg
atattcatgcctggtcaagaagacattgaggtcacttgtgagcaaattaaggagcgatta
gccgaagtggaagatgctccaggactggctgtgctccccatttattctcaactaccgtcg
gatctccaagccaagattttccagaaagcgcctgatggattgcgcaaatgtgtagtagcc
accaatatcgcggaaacgtctctgaccttggatggtatcatgtacgttgtggacagtggg
tattgcaagatgaaggtgttcaaccccaaaatcggaatggacgcccttcagatcttccct
gtgtcacaagcaaatgctaatcaaagatcgggtcgagccggtcgaacgggtccaggaact
tgctatcgtctctacacagatcggcaatatcgtgaagatctcttggccaccaccgtgccc
gagattcaacgaaccaatctggccaatgttgtgctcctcctgaagtccttgggggtggag
aatctgctccagttccacttcatggacccacctcccgaggagaatatcctcaactccatg
taccaattgtggatcctaggagctctggataacacgggccaactcacccgtttgggcaag
aaaatggtcgagttcccattggatccgtctttgagtaagatgctcatcatctccgaggaa
atgggctgcagtttggacatcctgattattgtgagcatgctctctgtgccatcgattttc
ttcagacctcgaggtcgcgaggaagactccgatgcggccaaagagaagttccaagtcccg
gaatcagatcatttaacctatttgaacgtgtaccatcaatggaagtccaatcgatactcg
ggtcaatggtgtgccgagcacttcatccacgtcaaagccatgcggaaggtccgcgaggtc
cgcgctcaactcaaggacatcatggaacaacagaagatgaaactgtcctccagtggaacc
gattgggacatcatccgcaaatgcatctgtgccgcattcttccatcaagccgctcgactc
aaaggtatcggcgaatacgtgaatacaaggacaggggttcctatgcacttgcatccaacc
tcggccttgttcgggatgggcttcactgcggatcacatcgtttaccacgaattggtcatg
accaccaaggaatatatgcagtgcgtcacggcggtcgatggttattggttggccgaattg
ggccccatgttcttttcggtaaaggaaacgggcaaatcgcggggagagaagcgtaaagtg
gccactgagcatctgaagaccatggagagagagatgaaggaggcggaggaggagctcaag
cgaagaaagacctttgaggaagagcaggccgagaaggagaggaatcgggtggccatcgcc
acccctgggcggtcttcgagcacgggagagagtggagggaaaacgcccaggaggacaccc
catcgatttggaatctag
DBGET
integrated database retrieval system
