Tigriopus californicus (tidepool copepod): 131881677
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Entry
131881677 CDS
T09700
Name
(RefSeq) spastin-like
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131881677
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tcf04812
]
131881677
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
131881677
Membrane trafficking [BR:
tcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
131881677
Cytoskeleton proteins [BR:
tcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
131881677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_22
AAA_16
AAA_24
Vps4_C
AAA_14
TIP49
DUF815
AAA_2
NPHP3_N
AAA_7
Mg_chelatase
ABC_tran
AAA_19
bpMoxR
RNA_helicase
nSTAND3
AAA_28
AAA_33
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
131881677
NCBI-ProteinID:
XP_059084594
LinkDB
All DBs
Position
6:5680246..5683838
Genome browser
AA seq
483 aa
AA seq
DB search
MMTMMATTTTTSRRMRMGSADGAMKRWRLPEPVSELRSDGFQFLHEALFLEEQGSTESQL
ILSLYQLGSSNLEKAIQACQAPNRGPTSSEERDYVAQKCSEMVLSLEQARQRVQALSQSP
VTRPKSGPTSSWESSLRSYSYPETPTKKKNPTHRARIKASGAQRPPMVSSSMTRNDRYHE
DDRDESRSSHEKSLKSSIVSGLSGIGFDDVIGQEKAKQSLRESVILPILRPELFHGLRTP
TRGLLLFGPPGNGKTLLVKALASETQAVLFSITAASLTSKYVGEGEKMMKTLFQMAAKRA
PSIIFIDEIDSLLSERKGDQNEASLRMKTEFLAGFDGVQTCQDTHVLVIGATNRPEQLDL
AALRRFSKRIFVEIPDFQARFTLLSQLLSKHGDPLPKEDLALVAKATAGYSGSDLTNLAR
DAAFGPIRDIPTSGILQVDRRNLRAINLNDFRNGLKRIRVSITNDVLQRYHEWNAKFGDV
SSQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgatgatggccacgaccacgacaacctcgagaaggatgaggatgggctcagcc
gatggggctatgaagcggtggagattaccggagcccgtgagtgaacttcgctcggacggc
ttccagttcctgcacgaagctttgttcttggaagaacaaggctccacggaaagtcagctc
attctttccttgtaccaattgggatcctcaaatctagaaaaggccattcaagcctgccag
gcaccaaatcgtggcccaaccagttcagaagaaagagattatgtggcccaaaagtgttca
gaaatggtcctcagtttggagcaagctcgacagcgagttcaggctctttctcaatcgcca
gtcacacgtccgaagtcaggccccacctcctcttgggaatcgtcgctgagaagctactcg
tatccggaaacgcctaccaagaagaagaacccgactcatcgtgctcggatcaaagcgagt
ggcgctcaaagaccgcccatggtatcgagttccatgactcgaaatgaccgttatcatgaa
gacgaccgcgatgagagtcggtcgagccatgagaagagtctgaaatcctctatagtctcc
ggattaagtgggattggctttgatgatgtgatcggccaagagaaagccaagcaatcgctc
cgtgaatcggtcattcttcccattttgagacccgaattgttccacggtcttcgcacgcca
actcgaggtctacttttattcggcccccctgggaacggaaagacgcttttggtgaaggcc
ctggcctctgaaactcaagctgtgctgttctccataaccgcagcctcgctcacttccaaa
tacgtgggcgaaggtgagaaaatgatgaaaacgctcttccaaatggcagccaaacgagca
ccttccatcatttttattgatgagattgattcgcttttgagcgagagaaagggcgaccaa
aacgaagcttctctgagaatgaaaaccgaatttctcgccggcttcgatggcgtccaaacg
tgtcaagacactcatgttctggttatcggggccaccaatcgaccggaacaactagatctg
gccgctctccgacgattttctaagcgaatttttgttgagatacccgatttccaggcccga
ttcactcttctgagtcaattgttgtctaaacatggagatcctctacccaaggaggatctg
gcattagtggccaaggccacggcgggatattccggatcggatttgactaatctagcccga
gatgccgcctttgggcctattcgagacatccctacttctgggatcctccaagtggatcgt
cgaaacttgagagcaatcaacctcaatgatttccgcaatggtttgaaacgtattcgcgtg
agcatcactaacgacgttctccaacgataccacgagtggaatgccaaattcggagatgtg
tccagccagtaa
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