Tigriopus californicus (tidepool copepod): 131881775
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Entry
131881775 CDS
T09700
Name
(RefSeq) protein HBS1-like
KO
K14416
elongation factor 1 alpha-like protein
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131881775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131881775
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131881775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
131881775
NCBI-ProteinID:
XP_059084714
LinkDB
All DBs
Position
6:complement(12197318..12199992)
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AA seq
702 aa
AA seq
DB search
MARHRDVRNMDTGEFEDDYDYGSSYGSSYMDETSLSTSVERDYMYRRGSVGASGHTPKMG
HFLARRSDSISSVPEEEEEDEGGQAGQRAGGTDGAGRGRVRARSDSETSSSSNPEDDVDP
LNEEEAGRLAQCLEQILDIVGDSIPESSIREVVKRCDFNPEVALNTLLNNPIKSIGRRAP
SLTPKPQPIVAPVPAPAPAPPPVVVAAEPPVVAARPKPKWLKAEAMSGPRSRSASPAVSA
ANGKWRDTAPPSVSTPKVSMRKGELDARARYQKERAGAQVPLNLVVVGHVDSGKSTLMGH
LLLALGQVSAKLMHKYETESKKLGKQSFALAWVLDESAEERERGITMDVGQHKFQTASKC
VTLLDAPGHKDFIPHMISGAYQADVSILVVNATRGEFEAGFEMGGQTREHALLVRSLGVS
QLVVAVNKLDTVGWDLARLADITAKLAHFLRQVGFKESDVVYVPCSGFTGDNLIRPSPHL
SSWYTGPTLVEAIDAFKPPERLVDKPFRMFISDIYKGQASGICCAGRIESGLVLKEDKVL
IMPLQEVATVKSVQQDELSVLSAFAGDHCSLVLVGPDQTSLANGMVLCDPQNPIPVTKRF
EARIVIFNIDIPITKGYTVVLHYGSVQVQAVLKRLLTQIHKSTGEVIKNKPRCLTKACSA
VVEVALDTPICLETYSHIRELGRFMLRNGGKTIAAGVVTKIL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcatcgggatgtgcggaacatggacacgggcgaattcgaagacgattacgac
tacggctcgtcgtacggctcgtcctacatggacgagacctcgctgtccacctcggtcgag
cgcgattacatgtatcgccggggctcggtgggggcctccgggcacacgcccaaaatgggc
catttcttggcccgccggtccgattccattagctccgtgcccgaagaagaggaagaggac
gaaggcgggcaggccggacagcgggcgggcgggacggatggggctggacggggccgcgtt
cgagcgcgttcggattcggaaacctcgagtagttccaaccccgaggacgacgtggacccg
ctcaatgaggaagaggccggcagactggcccaatgcttggaacagattctggacatcgtg
ggcgactccatccccgagagctccatccgggaagtggtcaaacgctgcgatttcaacccc
gaagtggccttgaacaccctgctcaacaaccccatcaagagcatcggacgacgcgcgccc
agtctcacgcctaaaccccagcctattgtggcgccagtgcccgcgcccgcgcccgcgccg
ccgccggtggtggtggccgccgagccgcccgtggtggccgcccgacccaagcccaagtgg
ttgaaggccgaggccatgagcgggcctcgatctcggagtgccagtccggcggtcagtgcc
gccaacggcaagtggcgggacacggccccgcccagcgtgagcacacccaaagtgtccatg
cgaaaaggcgaattggacgcgcgggcgcggtaccaaaaggagcgggctggcgcccaggtc
ccgctgaacttggtggtggtgggccatgtggactccggcaagtcgaccttgatgggccac
ctcctgttggccttgggccaggtcagcgccaaactcatgcacaaatacgagaccgagtcc
aagaagctgggcaaacagtccttcgccttggcctgggtcctggacgagagcgcggaggag
cgcgagcgcggcatcaccatggacgtgggtcagcacaagttccagacggccagcaagtgc
gtcacgctcttagatgcgcccggtcacaaggacttcatcccccacatgatcagcggggcc
tatcaggccgatgtgtccattctcgtggtgaacgccacgcgcggcgagttcgaggcgggc
ttcgagatgggcgggcagacccgtgagcacgctctccttgtcagatcgctgggtgtgtct
cagctcgtggtggccgtgaacaaattggacacggtgggctgggatctggctcggttggcc
gacatcacggccaagctggcccacttcctccgccaggtgggcttcaaggagtcggacgtg
gtgtacgtgccttgctcgggcttcaccggggacaatctgatccgacccagtccccatctg
agctcgtggtacacgggacccaccctggtggaagctatcgacgccttcaagccgcccgag
cgattggtggacaaaccgttccgcatgttcatctccgacatctacaagggtcaggcctcg
ggcatttgttgcgcgggtcgcatcgagtccggactcgtgctcaaggaggacaaggtgctc
atcatgccccttcaagaggtggccaccgtcaagagtgtccagcaagacgaactctccgtg
ttatcggcctttgccggcgaccattgctctctcgtgctagtgggtccggatcaaaccagt
ctcgccaacgggatggtgctgtgcgacccgcagaatcccattcccgtgaccaagcggttc
gaggcccggattgtgatcttcaatatcgacattcccatcaccaagggctacacggtggtg
ttgcattatgggagtgtgcaagttcaggccgtgctcaagcggctcctcacgcagatccac
aagtccacgggcgaggtcatcaagaacaagccccggtgtctgaccaaggcgtgcagtgct
gtggtggaggtggccttggacacgcccatctgcttggagacgtactcgcatatcagagag
ttggggcggttcatgctccgaaatgggggcaagaccatcgctgcgggcgtggtgaccaag
attctatga
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