Tigriopus californicus (tidepool copepod): 131882125
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Entry
131882125 CDS
T09700
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131882125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131882125
Spliceosome [BR:
tcf03041
]
Complex B
Other components
Prp19-related factors
131882125
Complex C
131882125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
RRM_3
zf-CCCH
zf-CCCH_4
Nup35_RRM_2
zf-CCCH_3
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
131882125
NCBI-ProteinID:
XP_059085162
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All DBs
Position
6:10392203..10394501
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AA seq
404 aa
AA seq
DB search
MATSKNTNTYNRQNWEDSEFPILCQTCLGENPYLRMVKERYGKECKICTRPFTVFRWNPG
AKMRFKKTEVCQTCAKIKNICQTCLLDLEYGLPVQVRDEVLKIKDELPTSDVNREYYLQQ
MDAQLAKTDGTVSALGGGVGKISTQKHEMLTKLARTTPYYKRNRPHICSFWVKGECKRGE
ECPYRHERPSDPDDPLSDQNIRDRYYGVNDPVADKIMKRVSNLPTLDPPEDPHITTLYVG
GLDETINEFDIKNNFYQFGEVRNITVVQKQGCAFVQYTKRSDAETAAKETFNKLVIKGKK
ITIRWGRSQGKQGAIEGQPGGSGPMVPVPGLPGALPPPPEELQNNFFGLAPSTSGTQAPA
VLGIIPYMFPRPPAGAVVPGMGPGAIHYPSQDPSRLGSTHPSQQ
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctacatctaagaatacgaacacgtataatcggcagaattgggaggattccgaattt
cccatattatgtcaaacgtgcttgggcgagaatccctatctgaggatggtcaaggagcgc
tatggcaaggaatgcaagatctgtacccggcctttcactgttttccggtggaatcccggg
gccaaaatgcggttcaagaaaactgaagtctgccaaacgtgcgccaagatcaaaaatatc
tgccagacctgccttttggacttggaatatggattaccggtgcaagtgcgagatgaagtg
ctcaagatcaaggacgagttgcccacatccgacgttaatcgggagtactatctccaacaa
atggatgcccaattggccaagaccgatggcaccgtatcggctttgggcggcggggtgggc
aagatttccactcaaaagcacgagatgctgaccaaattggcgcgaaccaccccttattac
aagcgaaataggccccacatttgctcgttctgggtcaaaggcgagtgtaaacgaggcgaa
gagtgtccctatcggcacgaacgcccttcagatccggatgatcctctgtccgaccaaaac
atacgggatcgctactatggtgttaatgatccggtggcagacaagatcatgaagcgggta
tcgaatctgcctactttggatccgcctgaagatccgcatatcaccacgctgtacgtgggt
ggactggacgaaactatcaatgaattcgacatcaagaacaacttctaccaatttggcgag
gtacgcaacattacagtggtccaaaagcaaggttgcgcattcgtccaatacacaaagagg
tctgatgccgaaacggccgccaaagagaccttcaacaagttggtaatcaaaggcaagaag
atcaccattcgatggggaagatcccagggtaaacagggggctattgaaggccagccagga
ggatccggtccaatggtcccggtgcctggcctgcctggggcgttacccccaccccctgag
gagttgcagaacaatttcttcggcttggcgccttccacatctggaactcaagcgccagcg
gtgcttggtattatcccctacatgttccccagaccaccagcaggcgccgtggtaccagga
atgggcccgggcgccattcattacccttcgcaagatccctccagattgggatctacccat
ccttcccaacaatag
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