Tigriopus californicus (tidepool copepod): 131882221
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Entry
131882221 CDS
T09700
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131882221
Membrane trafficking [BR:
tcf04131
]
Protein recycling
Others
EARP complex
131882221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
131882221
NCBI-ProteinID:
XP_059085288
LinkDB
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Position
6:complement(557180..562724)
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AA seq
1008 aa
AA seq
DB search
MAQASDFSAQKLKSRFKTLLPLKKEIPANAVAGAQVTFTEDEIHSLVAIQTKPTLEADPP
RRRHHGPGLPLTSNVEAGNISIDEKVDDEVLEEIPPEFFEANFDATSFELKRLSQSLDLQ
QIQSDRQKIHRQLSVVTQRVFAGILEKQSKCQAEMTNIDKIHGQLAESLKVCVQGRHGLS
QARAEFTGSSLGVLAAYRRRQQTQQLLNDLNIIRTLQKTDVRLQELLKEDNFPGAIQLLL
ECQQVVSTYSHFQAVKQLAVKLQDTLDLTEEHLDVALSKVCVGFNPLMYERIHQAYCLLG
KTQISMDQLHMHLTSTIHNMAWNVVYGHAMLSQEANMSLDLSKRPYADLCDSIATSSVIP
CLVDLCRALWSIMNSYKQLVDWHETNPTPSNASEMEQHYVEKKLSTGKMRIWQDVQTKTK
IFVLANDLSSLGMDHFLEFMDVIHRLIQVGHDFCGSNSDTLQESLKTQCWNYFHNYHLSR
LEEMTMHFENEGWAQCPVKPSFKVQQLVEYRHLKILEFTGLPTNLTSIKPMTSTPAATPR
KAFRNKVQDLNLDLSLSSPFDFDFGGSHDPEETFFLEANGIGGDELEVYSEEDDSDAEID
EALKRDFVDEGTGEMGNHDHSKRTSNRTSQRKGHDPPILTNTSLMILRLCGKYIHLMKAL
EPIASNVFISMMQLLEYYLFVVFNFFTKDLSSDLMAKLTHEGLNAILERIDTDMVRRVVD
KPPQTPIMSPSPSNQSLSESQVVTGIVDLPELSPTVQMDQPESLFGLQEKLVAVESAVYL
AKQIQSLKGDILQCVTNDQRSLVDTYESQTLMNVVGLRLPVYMTSVQMAINTDVILQLMA
KVAWDIKDVKSQHSQYVEVLLRDCQMFSLRLQEIRKNVHVSGDVRKALWELCTLCASKIF
VEGFSSAKKCSNEGRALMQLDYRQFLLKLENLSDLKPLPYQDYVSNYVKAYYIPESDLEA
WVKQHNNEYTPKQMVALVNCVAYSNNRTKQKLNNMISDLGTRIRRDKH
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcatcggatttctcggctcagaagctcaagagtcgcttcaaaacgctgtta
ccgttgaagaaagagattccggccaatgcggtggccggagcccaggtcaccttcacggaa
gacgagatccacagcttggtggccattcagaccaagcccacccttgaagctgatccgcct
cgaagacggcaccatggccctggactgccactcacctcgaatgtagaagccggcaacatc
tccattgatgagaaagtcgacgatgaagtcctggaggagattccgcccgagttctttgag
gccaattttgatgccaccagtttcgagctcaagagactgtcccaatccttggacctgcaa
caaatccagagcgatcgccaaaagatccaccgacaattgagcgtggtgactcagcgggtg
tttgccgggatcctggagaaacaatccaaatgtcaggccgagatgaccaacatagacaag
atccacggccaactcgccgagagcctcaaagtgtgtgtgcaaggccgacacgggctgtcc
caagcacgcgctgaattcacgggttcttccctaggcgtattggccgcataccgacgacgt
caacagacccagcaactcctcaacgacctaaacatcatccgtacccttcaaaaaactgac
gttcggctgcaggagttgctcaaggaggacaacttccccggcgccattcagttgctgctg
gaatgccaacaagtggtgagcacctacagccatttccaggccgtcaagcaattggcggtc
aaacttcaagacacgctggacttgactgaggagcacctggatgtggccttatccaaggtg
tgcgtgggcttcaacccgctcatgtatgagcgcatccatcaggcctactgtctactgggc
aagactcagatctccatggatcagcttcacatgcacttgacgtccaccattcacaacatg
gcgtggaacgtggtctacggacatgccatgttgtctcaggaagccaacatgagtcttgat
ctgtccaagcgaccctacgctgacctttgtgatagcatcgccacttccagcgtgatcccg
tgtctcgtggacctgtgtcgagccttgtggtccattatgaactcgtacaagcaattggtg
gattggcacgagaccaatcccactccgagcaacgcttcggaaatggagcaacactatgtg
gagaagaagttgtccacgggaaagatgaggatctggcaagatgtccagaccaagaccaaa
atctttgtgttggccaatgacctgtccagtcttggtatggaccatttccttgagttcatg
gatgttatccacaggttgatccaagttggccatgatttctgtggaagcaactcggacact
ctccaagagtccttaaagactcagtgttggaactatttccacaattaccatctctcgcga
cttgaggagatgaccatgcatttcgaaaatgagggctgggcccaatgcccggtcaagcct
tccttcaaggtccaacaattggttgagtatcgacacttgaaaatcctcgaattcaccgga
cttcccaccaatcttacctcgatcaaacccatgacctccactcctgcggccacgcccaga
aaggcctttcggaacaaggtgcaggatctcaacctagacctgtcgctctcctcaccgttt
gacttcgattttggtggctcccatgaccctgaagagaccttctttctggaggccaacggg
attggaggtgatgaattggaggtctactcggaggaagatgattccgatgccgaaatcgac
gaggccctgaagcgggattttgtcgatgaaggcactggggaaatgggaaatcacgaccat
tctaaaaggacaagcaatcgaacttcacaacgaaaaggccacgatccgcccatcctcacc
aacacgtccttaatgattttgaggctctgtggtaaatacatccacctcatgaaggcctta
gaacccatcgcttccaacgtgttcatctccatgatgcagttattggagtactacctcttc
gtggtatttaacttcttcaccaaagacctgtccagtgatctgatggcaaaattgacacac
gagggtctgaacgcgattctggagagaatcgataccgacatggtacgtcgcgtagtggac
aaaccgcctcagacccccatcatgtcgcctagtccttccaatcagtctctgtcggaatct
caagtggtaactggtatcgtagatttgcctgaactttcgccgacggtgcaaatggaccaa
cccgaatctctgtttggcctccaagaaaaattggtggccgtcgagtctgccgtgtacctt
gccaagcaaatccagagcctcaaaggagacattctccaatgtgtgactaatgaccaaaga
tctttggtcgatacctacgaatctcagactttaatgaacgtggttgggcttcgacttccg
gtgtacatgacctccgtgcaaatggccatcaataccgacgtgattcttcagcttatggcc
aaggtcgcttgggacatcaaggatgtcaaaagccagcacagtcagtatgtcgaagttctt
ctacgagattgccaaatgttcagcttacgcctccaggagattcggaaaaatgtccatgtg
tctggagatgtccggaaagccctgtgggaactttgcactttgtgcgcatccaaaatcttt
gtggaaggattttctagcgctaagaagtgttccaatgagggtcgagccctcatgcaatta
gactaccgacagttcctcctcaaattggaaaacctgtccgatctgaagcccttaccctat
caggattacgtgtccaactacgtcaaagcctattacatccctgagagcgacctcgaggcg
tgggtcaagcaacacaataacgaatacacccctaaacaaatggtggcattggtcaattgt
gtggcctacagcaacaatcggacaaagcaaaagttgaacaatatgattagtgatctcggg
acccggatccgaagggacaaacattaa
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