KEGG   Tigriopus californicus (tidepool copepod): 131882475
Entry
131882475         CDS       T09700                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131882475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcf03041]
    131882475
   03036 Chromosome and associated proteins [BR:tcf03036]
    131882475
Spliceosome [BR:tcf03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    131882475
 Complex B
    131882475
 Complex C
   U2 SnRNP specific factors
    131882475
Chromosome and associated proteins [BR:tcf03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    131882475
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_2 HEAT_ECM29 Htt_N-HEAT_1 XMAP215_CLASP_TOG
Other DBs
NCBI-GeneID: 131882475
NCBI-ProteinID: XP_059085605
LinkDB
Position
6:complement(6962060..6967348)
AA seq 1378 aa
IGPGLCISSPIQWGRVSLIGFNAGRFCFSLAAFENELLAVRAARQSLLDTENQPVEPAEK
QPDPDRRIGLTEVGVFDGDIYSGEKSKFEGYHTSLALNEDADEEDSGPALGPKRASYTAP
QAILRDNQRQAEREEADPFAAHQRPKIVDREDEYRRKRSQQIISPVRLDPFANGGATPDV
GSRGYADVMREQQLRHTEADLNRQMKDRAKEGTLKVVDTNISQGVRTAPKRRGRWDVTTD
ETPSKKAIGTPSAGDAPATPAHLGQWDATPGRRDPGSETPSGATPAQRMWDPTPAHTSTT
PGRDAPGAATPGGATPGGRRNRWDETPRTERETPGHGAGWAETPRTDRGGGGDKTISDTP
GGGKRRSRWDETPGATPSGATPVAGNATPGGATPSMTPGGLTPGGMTPMGMTPMSGATPS
MMTPSGATPMGQKAMGMATPSPAQLQSMTPEQLQAYRWEKEIDDRNRPLSDEELDQMFPP
GYKVLPPPAGYIPIRTPARKLTATPTPMMGQTPTGFYMQPETPDRNKYADTQPKGQNLPF
LKPEDAQYFDKLLVDVDEDTLTPEEQKERDIMTLLLKIKNGTPPMRKSALRRITDKAREF
GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASSLGIPSLLP
FLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVDIIEHGLVDEQQKVRTITA
LALAALSEAAAPYGIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT
REVMLILIREFQSPDEEMKKIVLKVVKQCCSTDGVEAQYIKDEILPHFFKHFWNHRMALD
RRNYRQLVDTTVEIANRVGASEIINRLVDDLKDENEQYRKMVMESIEKIMDGLGAADIDS
RLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNALGKRVKPYLPQICGTILWRLNNKSAK
VRQQAADLISRIAGVMKTCQEEKLMGHLGMVLYEYLGEEYPEVLGSILGALKAIVNVIGM
IRMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSPREWMRICFELLELV
KAHKKAIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
TVLPGLMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
TACAAIKHMSLGVYGFGCEDALTHLLNFVWPNVFETSPHLVQAFMDAVDGMRVSLGPIKV
LSYVVQGLFHPARKVRDVYWKIYNSLYIGSQDALVAGYPRIPNDAKNMYSRYELDYVL
NT seq 4137 nt   +upstreamnt  +downstreamnt
attgggcctggcctgtgcatttcgtcgcccatccaatggggccgtgtttcgttgattgga
tttaatgccggccgtttctgtttttcccttgcagcttttgaaaacgagttattagccgtg
cgggccgcccgtcaatcactcttggacaccgagaatcaacccgttgagcccgccgaaaaa
cagcccgatcccgatcgacgcattggtctaactgaggtgggcgtgttcgatggcgacatc
tactcgggcgagaagagcaaattcgagggctatcacacgtcgttggccctcaatgaagat
gctgacgaggaggattccggcccggctttgggccccaaacgcgccagttacaccgccccg
caagccattctccgcgacaatcaacgccaggccgaacgggaagaagccgacccgtttgcc
gctcatcaacgacccaagatcgtggatcgcgaggatgaatatcgacgcaagcgaagccaa
caaatcatctcgcccgttcgcttggatccgttcgccaacggcggggccacgcccgatgtc
gggtctcggggctatgccgatgtcatgcgcgagcagcaacttcgccacaccgaggccgat
ctcaatcggcagatgaaagatcgggccaaagagggcacgcttaaggtggtagataccaat
atctcgcagggcgtgcgcaccgcgcccaaacgtcgtggccgatgggacgtcaccacggat
gaaacgcctagtaagaaagccattggcacgcccagtgccggagatgcccccgccacgccc
gcccatttaggtcaatgggatgctacgcccggtcgacgagatccgggatcggaaacaccc
agcggtgccacacccgctcaacgaatgtgggatcctacgcccgcccacacatccaccacc
cccggtcgtgacgcccccggggcggccacgcccggtggggcaactcctggtggccgtcgt
aatcgttgggatgaaacaccccgaaccgaaagggagacacccggtcatggcgcgggttgg
gccgaaacgccccgaaccgaccgagggggtggcggcgacaaaaccatttcggacacgcct
ggtggcgggaaacgccgatcccgttgggacgagaccccgggggctacaccctcgggggcg
acaccggtggctggcaatgctaccccgggtggcgctaccccgagtatgaccccgggcgga
ttgacacccggcggcatgacccccatgggcatgactcccatgagtggggctacaccctcg
atgatgaccccttccggcgccactcccatgggtcagaaagccatgggcatggccacacct
agtccggctcagctgcaatctatgacacccgagcaacttcaggcttatcggtgggagaag
gagatcgacgatcgaaaccgtcccttgtctgacgaggaactcgatcaaatgtttcctcct
ggctataaggtgctgccgccaccggccgggtatattcccattcgcacacccgcccgcaaa
ttgacggccacccccacgcccatgatgggacagacgcccaccgggttttacatgcagccc
gagactccggatcggaataagtatgccgacacacagcccaagggccaaaatctacccttt
cttaaacccgaggatgcccaatattttgacaagcttctggttgatgtggacgaagacact
cttacccccgaagagcagaaggaacgtgacatcatgaccctcttgctgaagatcaaaaac
ggcacaccacccatgcgaaaatccgccctgagacgcattacggacaaagctcgtgagttt
ggagcagggccactctttaatcagattctgcccttgttgatgtcgcccactttggaagat
caagagcgtcatcttctggtgaaggttatcgatcgcattctgtacaagttggacgatctc
gtccgaccctatgttcacaagattctcgtggtcattgagccgttgctcatcgacgaagat
tactatgctcgagtggaaggtcgagagatcatctccaacttggccaaagctgcgggtctg
gccaccatgatctccaccatgagaccggatatcgataacatcgacgagtacgtgaggaat
acaacggctcgagccttcgctgtggtggcttcgtctttgggaataccgtcgctactcccg
tttttgaaggctgtctgcaagtccaagaaatcgtggcaagctcgtcacacgggcatcaaa
attgtgcaacagatcgccatcctgatgggatgtgccatcttgcctcatcttcgctccttg
gtcgatatcattgagcacggtttagtggatgagcagcaaaaagtgcgaaccatcacggcc
ttggcgctcgcagctctttccgaagccgctgctccttatggtatcgagtcattcgattcc
gttttgaagccgttgtggaaaggtatccgaacgcatcgtggcaagggtcttgcggccttc
ttgaaggccatcggttatctcatccctctcatggacgccgagtacgccaattactacacg
cgtgaagtcatgttgatcctcattcgagagttccaatcgcctgacgaggagatgaagaaa
atcgtgctcaaggtggtgaagcagtgttgttccaccgatggtgtggaagcacagtacatc
aaggatgagatcctgcctcatttcttcaagcacttttggaaccaccgcatggctttggat
cgaagaaactatcgccagttggtcgacaccactgtggagattgccaaccgcgtgggtgcc
agtgagatcattaatcggttggtggacgatctaaaagacgaaaatgagcaataccgtaag
atggtcatggagagtatcgaaaagatcatggacggtctgggagcggctgatatcgattcc
cgactcgaggagcagctcatcgatggtatcctgtacgccttccaggaacagaccaccgag
gatgtggtcatgctcaacggttttggcaccattgtcaacgcattaggcaagcgtgtcaag
ccgtatttgccgcaaatttgcggaaccatcctgtggcgactgaacaacaagtcggccaaa
gtgagacaacaggccgcagatctgatttcccgcattgccggcgtcatgaagacgtgtcaa
gaagagaaattgatgggtcatctgggcatggttctatacgaatacttgggcgaagagtac
cccgaggtcctgggatccatcctgggtgccttgaaggccattgttaatgtcatcggtatg
attcgcatgacacctccaatcaaggacctcctgcctcgactgacgcccatcttaaagaat
cgacatgagaaagtccaagagaactgtatcgatctggtgggtcgtattgcagacagaggt
ccggagtacgtttcacctcgggaatggatgagaatttgctttgagttgctcgagttggtt
aaagcgcacaagaaagccattcgtcgggctgccgtgaacactttcggttatatcgccaag
gccattggtccccatgacgtattggccactcttctaaacaatttgaaggtccaagagcgg
cagaaccgagtttgcaccaccgtggcaattgctattgtggcggaaacctgttccccgttc
acggttttgccgggtttgatgaacgaatacagagtccccgagttgaacgtccagaacggg
gtgctgaaatcgttgtcgtttttgttcgaatacatcggagaaatgggaaaggattacatc
tacgctgttacccctctgcttgaagatgctctcatggaccgagatctggttcatcgacaa
acggcttgcgctgccatcaaacatatgtctttgggcgtgtacggattcggttgcgaggac
gctctgacgcatctgctgaattttgtgtggcccaacgtgttcgagacatcgcctcattta
gtgcaagccttcatggatgccgtggatggaatgcgcgtctctctcggtcccataaaggtt
ctgtcctatgttgttcagggtctgtttcatcctgcccgaaaagtgcgcgatgtgtattgg
aagatctacaactccttgtatataggatcccaagatgctctggttgccggatatcctcgg
attcccaacgacgccaagaacatgtactcgcgctatgaattggactatgttttgtga

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