Tigriopus californicus (tidepool copepod): 131882615
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Entry
131882615 CDS
T09700
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131882615
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131882615
Spliceosome [BR:
tcf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
131882615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
SLFN-g3_helicase
Organ_specific
AAA_22
Motif
Other DBs
NCBI-GeneID:
131882615
NCBI-ProteinID:
XP_059085791
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All DBs
Position
6:11966215..11968734
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AA seq
745 aa
AA seq
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MSASTVIRLAHDIREDLDTPSDPAWSRTQDVLEDELKDKTFAHFQFAKPIQFGLANAGFV
RPSPIQWRALPVAQTGLDMIVQAKSGTGKTLVYVLAALHRLDVTKKAVQTLVLAPTREIA
VQGARVALEVGSGMPGLKAQAFIGGTPLADDVAKVKSCHVAVGSPGRIKQLLMERALKPD
AIKLFVLDEADRLMDGDFLSDVRWIAHRLPERKQVMALSATYPDDLAQIASTLMHQPNHV
RLGQDDQVLHGVAQFVRPVRAHPQVQRQVAFKLKALLDLLASVSFNQCLVFSNYSVRAQA
MCEKALAQGWPAVFISASQDQSERLQAISCLKQFQCRILFSTDLTARGIDAQNVDLVINV
DVPWDASTYLHRIGRAGRFGSRGLTVTLAAEGDEYDNLRKIVFHTKAQIVILANVKDLPE
NFDLWTCDRTKMCLLEGKECDPDETAGFRRRPKKEDNTSKDEVKTESNSATKIDSSQDAF
ADLQWVKVPEEERVLNKPVTGLQLLGHCDTEDLEDDGDYDHDYEFGLEEEEAGIIDDQML
EEDFEEKVKNASTLLKSFFFVNNKRTAIKLKPGLEDLQFGDFLEDVKRFKKDKRITKKFE
ETVIPSLEIPNQVQEAADLYLQAKRSFFERESNQAEKYFQSLKLEEVLNIVKNREEIPEV
ISEEYQDVKWNHSQEVAADFEPVSNFSFPYDLPHPDPGQLIPSNPLSSNDLGQWFFQWQA
QVQENKQFIQDMEFYLKMKAFEEHD
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctcgaccgtgatccgattggctcatgatattcgagaggacctcgatacaccc
tcagatccggcgtggagtcgaacccaggacgtcctagaagatgagctgaaggacaaaacc
tttgctcactttcaattcgccaagcccattcaattcggattagccaatgcagggttcgtt
cgtccctctccgattcaatggcgggctcttcccgtagctcaaacgggcttggatatgatc
gttcaagccaaaagcggcacaggaaaaaccttggtttacgtcttagccgctttacaccgc
ttagatgtgaccaagaaagccgttcagacactggtcttagcacctacccgcgaaatcgcg
gtgcagggcgctcgggtagctttggaagtaggctcgggtatgcccggcttgaaggcccaa
gcttttatcgggggtacccctttggccgacgatgtggccaaagtaaaaagttgccatgta
gccgtaggctcgcccggacgtatcaaacagctactgatggaacgggccctcaaacccgat
gccatcaaactcttcgttctcgacgaagctgaccggctcatggatggtgactttttgtcg
gacgtccgctggatcgctcatcgcttgccagaacgcaagcaggtcatggccttgtcagcg
acctatccagatgatttggctcagattgcctccacactcatgcatcaacccaatcacgtg
cgattgggtcaagacgatcaggtcctgcacggcgtggctcaattcgtgcgcccagttcgg
gctcatccacaagtccagcggcaggttgcatttaagttgaaagcacttttagacttgtta
gcctcagtgtctttcaaccaatgccttgtattcagcaactactcggtgcgagctcaggcc
atgtgtgaaaaggccttggctcaaggctggccagcggtcttcatctcggccagtcaagat
caaagtgagcgattacaggcaatcagttgcttgaaacaattccaatgccgcattcttttc
tccaccgatctcaccgctcgaggcatagatgctcaaaacgtggacctggttatcaatgtg
gatgtaccttgggatgctagtacgtatttgcatcgcatcggacgagctgggcgatttgga
tcgcgcgggttgaccgtcactttggcggctgagggtgacgagtatgacaatctgagaaaa
atcgtgttccacaccaaagcccaaatcgtaatcttggccaatgtaaaagatctccctgaa
aactttgatctttggacttgtgatcggaccaaaatgtgcttgttggaaggaaaagagtgt
gaccctgatgaaacggccggtttccgtagaaggcccaagaaggaagataacacaagcaaa
gatgaagtcaagactgaatctaattcggcgaccaaaattgacagttcccaagacgccttt
gccgatttacaatgggtcaaagttcccgaggaagagagggttttgaacaaaccggttact
ggattgcagctgttgggtcattgtgacaccgaagatttggaagatgatggcgattacgat
catgattatgaattcgggcttgaggaagaagaagctggaattattgatgatcaaatgcta
gaggaagatttcgaagagaaggtcaagaacgccagcacacttttgaagtctttcttcttt
gtgaataataaaagaactgccatcaaattgaaacccggattagaggatctacaatttgga
gacttccttgaagacgtcaaacgattcaagaaagacaagagaatcaccaagaagtttgaa
gagactgtgattccgtcattagagattcctaaccaagttcaggaagctgccgacctatac
ttacaagctaagcgatctttttttgaaagagagtcaaatcaggcagagaaatacttccaa
agcctcaaacttgaggaggtcctgaacatcgttaagaatcgcgaggaaattcccgaggtc
atctcggaggaataccaagacgtcaaatggaaccactcccaagaagtcgcagccgatttt
gagcccgtgtcaaacttcagctttccatacgatctccctcaccctgatccgggtcaactc
attccgtcaaatccactttcttcaaacgatcttggccaatggttcttccaatggcaagct
caagttcaagaaaacaaacagttcattcaggatatggagttctatcttaaaatgaaggca
ttcgaagaacatgattaa
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