Tigriopus californicus (tidepool copepod): 131882743
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Entry
131882743 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131882743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131882743
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131882743
Spliceosome [BR:
tcf03041
]
Complex C
Other components
Step II factors
131882743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
AAA_19
GIPC1_GH2
T2SSE
Flavi_DEAD
nSTAND_NTPase5
nSTAND3
ABC_tran
PhoH
AAA_30
XPA_C
NB-ARC
ATPase
TsaE
Motif
Other DBs
NCBI-GeneID:
131882743
NCBI-ProteinID:
XP_059085977
LinkDB
All DBs
Position
6:6573213..6577167
Genome browser
AA seq
1220 aa
AA seq
DB search
MTSVSSELDQLEHLSLVSKICTELDNHYSLNDKDLAEFIIHLARENPKSVDFKRALSACD
ADFADSFMDNLLRIINHMQQKAHPPDPQRNLDQWSQSWPCLALPNQTTQDQPSKGDSGPP
APPEDEMMAMLEAMAPSQRPPERADSPTSTGRGERTRRGQESRSKRTKERRRSRSRSKSR
SPSRKRDRDRDRDRRRHRRTSRSRSRSRSRSRSRSRSRSRSRERSSRNRDRSDRSQTRRK
ALEATTFHEAPQVQKVYSGRVQNITNFGCFVSLEGFRQKVEGLVHISQLRREGRVNAVDE
VVSRGQSVWVKVLTITGSKMSLTMKEVDQQSGRDLEPAPTADVNEREADFALRNPERPSG
GRMGLADVLGRHMPDEEAGSSHKKKVRMSSPERWEIKQLIAANVIDKSELPEFDEETGLL
PKVDSDEEDVEIEMVEDEAPFLKGHGRMVNDLSPVRIVKNPDGSLAQAAMMQGALSKERR
EQKMAERQAAESETQTGSNSKDWQDPMAVKLNQNTSAFSMESDYKMGGPGGDLPEWKKHI
ISGAKGSFGKKTSMTIMEQRKSLPIYKLKDELIKAINENQILIVVGETGSGKTTQLTQYI
AEAGFAARGKIGCTQPRRVAAMSVAKRVAEEFGCLLGQEVGYTIRFEDCTTNETMIKYMT
DGMLLREALIDPEMKNYSCIMLDEAHERTISTDVLFGLLKASVKSRPELKLIVTSATLDA
VKFSEYFFEAPIFTIPGRTFPVEILYTREPETDYLDASLITIMQIHLNEPQGDVLLFLTG
QEEIDTACEVLFERMKSLGPEVPELIILPVYAALPSEMQSRIFDPAPPGARKVIIATNIA
ETSLTIDGIYYVVDPGFVKQKVYNSKTGMDALVVTPISQAQAKQRAGRAGRTGPGKTYRL
YTERAYRDEMLATPVPEIQRTNLAATVLQLKAMGINDLLHFDFMDAPPVEAMIHALELLH
TLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVTLHCSDEILTIVSMLCVDNVFYRPK
EKQAVADQKKAKFNQAEGDHLTLLAVYNSWKNNKFSSAWCYENFIQMRNLKRAQDVRKQL
LGIMDRHKLDVVSCAKSTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQIVAIHPSSALF
HRQPEWLIYHEVVQTTKEYMRNCTAIDPKWLVEFAPAFFRFSDPTRLSNFKKNQRIEPLH
NKYEENKDAWRISRTRKRRN
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgtgtcgtcggagttggaccagttggagcacttgtcgctcgtgtccaagatc
tgcactgagttggacaatcactactcgctgaatgacaaggacctggccgagttcattatc
catctggcgcgcgaaaaccccaagagcgtcgacttcaagcgcgccttgagcgcctgcgat
gccgacttcgccgactccttcatggacaacctgctccggatcattaaccacatgcagcaa
aaggcccacccgccggatccgcaacgcaacctcgatcagtggtctcaatcctggccttgt
ttggccttgcccaatcaaaccacgcaggaccagccatcgaaaggtgattcaggccccccg
gccccgccagaggatgaaatgatggccatgctcgaggccatggccccgtcacaacgtcca
cctgaacgggccgattcgcccacttccacgggcaggggtgagcggacccgtcggggccag
gaatcccgctccaaacgcactaaagagcgtcgacgatcccggtcccgctccaagtctcgc
tcgccgtcccggaaacgggatcgagaccgagatcgagatcgacgtcgtcatcgccgcacc
agtcgctctcgctcccgctctcgctcccgctctcgctcccgctctcgctcccgctctcgc
tctcgcgaacgatcgtcccgaaatcgagaccggagtgaccggagccagacccgtcggaaa
gcgctcgaggctaccacgtttcacgaggctccgcaagtgcaaaaagtctatagtggacgg
gtgcaaaatatcaccaattttgggtgtttcgtctccttggaaggcttccggcagaaagtc
gaaggcttggtgcacatatctcagttacggcgggaaggccgcgtgaacgccgtggatgag
gtagtgagtcggggtcaaagcgtgtgggtcaaggtgctcaccattacggggtccaagatg
tccctcaccatgaaggaggtcgatcagcagtcgggccgtgatctagagccggcccccacg
gccgacgtgaatgaacgcgaggcggactttgcgcttcgcaatcccgagcggccctcgggg
ggacgcatgggcctggccgatgtgttgggccgccatatgccggacgaggaagccggctcg
agtcacaagaagaaagtgcgcatgagttcgcctgagcgatgggagatcaagcaactgatc
gcggccaacgtcatcgacaaatccgagttgcccgaatttgacgaagagaccggtctcttg
cccaaggtcgattcggacgaggaggatgtggaaatcgagatggtcgaagacgaggcgccc
ttcctcaaaggccacgggcgtatggtcaatgacttgagtccggtgcggatcgtcaagaac
cccgatggctcgctggcccaagctgccatgatgcagggggctctttccaaagaaagacgc
gaacagaaaatggccgagcggcaagccgccgagagtgagacgcaaacggggtccaattct
aaagactggcaggatcccatggcggtcaagctcaatcagaacacgtcggcctttagcatg
gagtccgattataagatggggggaccgggtggagatttgccggaatggaagaaacacatc
attagtggcgccaaaggctccttcggcaagaagaccagtatgactatcatggaacaacgg
aaatcgctccctatatacaaactaaaagacgaactcatcaaggccatcaacgagaaccaa
atcctcattgtagtgggcgagaccgggtctgggaagaccacgcaacttacacagtacatt
gccgaagcgggatttgccgcccgaggcaaaattggttgcacccagccgcggcgtgtggct
gccatgtccgtggctaagcgagtcgccgaagaatttggatgtcttctcggtcaagaagtg
ggctacacgattcgtttcgaagattgcaccaccaacgagaccatgatcaagtacatgacg
gacggcatgttgctacgagaggctctcatcgaccccgaaatgaagaactactcctgtatt
atgctggacgaggctcacgagcgaaccatctcgaccgacgtactcttcggtctattgaaa
gcgtccgtcaaatctcgacccgaactgaagctcatcgtgacatcagctactttggatgcg
gtcaagttctcggagtatttctttgaggcgcccatttttaccattcctggtcgaacattc
cccgtcgagattctgtacacgcgtgaacccgagaccgattatctggacgcctcacttatc
accattatgcaaatccatttgaacgaaccgcaaggggacgttttgctgtttctcacgggt
caagaggagatcgacactgcgtgtgaggttctgttcgagcggatgaaatcccttgggcct
gaggtgcccgaactgatcatcttacccgtttatgctgctttgccaagcgagatgcagtcc
agaatttttgatcccgctccacccggggctcggaaagtcatcatcgctacgaatatcgcg
gagacatccctgacaattgatgggatttactacgtagttgatcccggttttgtcaagcaa
aaagtatacaactcaaaaacgggcatggacgccctggtggttacgcccatttcccaagct
caagccaaacaacgcgctggtcgagccggaagaacaggtcctggaaaaacctatcgattg
tacacggagagagcctatcgcgacgaaatgctggccactccggtgcccgaaatccagcga
actaatctggcggccacggtattacaactgaaggccatgggtatcaacgatttgctccac
tttgacttcatggacgctcctccggtagaagccatgatccacgccctcgaactgctccac
acgctcagtgctttggatgacgagggtctcctgacacgtttaggtcgccgtatggccgag
tttcctctggagcccaatctgtcgaaaatgttgattatgtcggtgaccttacattgctcg
gacgagatcctcaccattgtatcgatgctctgcgtagataacgtgttctaccgccccaaa
gaaaagcaagcagtggccgatcagaagaaggccaagttcaatcaagctgaaggcgaccat
ctcactctcttggctgtgtacaactcgtggaagaacaataaattctccagtgcttggtgt
tacgagaactttatccagatgcgcaacctcaagagggctcaagacgtcaggaagcagctc
ctgggcattatggatcgccataagctggatgtggtgtcgtgcgccaagagcaccgctcga
gttcaaaaggccatttgttcggggttcttccgcaatgcggccaagaaggatccgcaggaa
ggatatcgaactttagtggactcgcagatcgtggccattcatccctcatcggctctgttt
caccgacagcccgaatggctcatctatcacgaagtggttcagaccaccaaggaatacatg
cgcaattgtacggccatcgacccaaaatggctcgtcgagttcgccccggctttcttcagg
ttctcggatcccacgcgactttctaatttcaagaagaatcaacgcatcgaaccccttcac
aacaagtacgaggaaaacaaagatgcctggagaatttctcgaacccggaaacgacgcaat
tag
DBGET
integrated database retrieval system
