Tigriopus californicus (tidepool copepod): 131882745
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Entry
131882745 CDS
T09700
Name
(RefSeq) DEAD-box helicase Dbp80-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03013
Nucleocytoplasmic transport
tcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131882745
03015 mRNA surveillance pathway
131882745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131882745
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131882745
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131882745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
131882745
NCBI-ProteinID:
XP_059085979
LinkDB
All DBs
Position
6:6577144..6579934
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AA seq
463 aa
AA seq
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MSGTKDVDWAGAADAQEKSLIKQVGGLEVEDKTDEAASAAEQSLFQKIIRKGLIESTHDL
EIQRKDPKSPLFSVKSFEALNLKPQLLKGVYAMGFNAPSKIQESALPTLLADPPQNMIAQ
SQSGTGKTAAFVLAMLSRVDQSKNYPQVLCLSPTYELALQTGEVALKMSQFATDLSLRYA
VRGEEIARGSNITDHIIIGTPGKVLDWGLKFRFFDLKKIKVFVLDEADVMIATQGHQDQS
IRIQKQLSRECQILLFSATYDSTVMDFAENIVPNPVIIQLRREEETVSNISQYWVQCETP
ELKYTSIANIYGVITVGQAIIFCHTRKTASWLAEKLTKDGHTCALLSGELSVGDRIGVLD
RFRDGKEKILITTNVLSRGIDVEQVTIVINYDLPVDHTNGKADCETYLHRIGRTGRFGKR
GLAINLVDGEKSMEVLHDIESHFGKPIVKLDTEDVSEIEKLQK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtacgaaagacgtagattgggctggagcggctgatgcccaagaaaaatccctg
atcaagcaagttgggggtctagaagtggaagacaaaacggatgaggcagcctctgcggcc
gagcaatcgctttttcaaaagattattcgaaaagggctgatcgagtctacccatgatctc
gagatacaacgtaaagatcccaaatcgcccttgttctcggtgaagtcgttcgaggccctc
aatttgaagccgcaattgctcaaaggggtttacgccatgggattcaatgcacccagtaag
attcaagaatctgcccttcctacgctcctagcagatccgcctcaaaacatgatagcccaa
tcacaatcggggaccggaaagacggctgctttcgttttggcaatgctgagtcgtgtagac
caatccaagaattatccacaggttctttgcctctcgcccacctatgaactggccctgcaa
accggcgaagttgcattgaaaatgtcccaattcgccacggatttgtctcttcgatatgct
gtccgaggcgaggaaattgcccgcggaagtaacattacggatcacatcatcattgggacc
ccaggaaaggttttggactggggattgaaattccgcttcttcgacctaaagaaaatcaag
gtcttcgtcttggacgaagcggatgttatgattgcgactcaaggccaccaagatcaatcc
attcgaattcaaaagcaactctctcgagagtgtcaaatcctactcttctcggccacttat
gattcgacagtcatggatttcgccgagaatatcgttcccaatccagtaattatccaactc
cggcgcgaagaagagaccgtttccaatattagtcagtactgggttcagtgcgagacgcca
gaattaaaatacacgtccattgctaacatttacggcgtcatcacggttggacaagccatc
atcttctgtcatacccgcaagactgcctcatggttggccgagaagctcaccaaagacggc
cacacctgtgccttgctctccggagaattgagcgttggagacagaattggggttctagac
cgtttccgagatggcaaagagaagatcctcatcaccaccaatgttctatctcgtggaatt
gacgtggagcaagtgaccatcgttatcaattatgacctgcccgtagatcataccaacggt
aaagccgattgtgaaacctaccttcaccgaatcggacgaacgggtcgttttggaaaacga
ggcttggccatcaatcttgtggatggcgagaagtctatggaagttctccacgatatcgaa
agtcattttggcaagcccatcgtgaaactggacaccgaggatgtgtccgagattgaaaag
ctacaaaagtaa
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