Tigriopus californicus (tidepool copepod): 131882801
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Entry
131882801 CDS
T09700
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131882801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131882801
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131882801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_16
TPR_12
TPR_19
TPR_17
TPR_11
TPR_8
TPR_CcmH_CycH
TPR_7
ARM_TT21_C
TPR_9
TPR_15
TPR_Slam
PPTA
TPR_MalT
BTAD
TPR-S
DUF829
Parb-CE
Motif
Other DBs
NCBI-GeneID:
131882801
NCBI-ProteinID:
XP_059086048
LinkDB
All DBs
Position
6:10276514..10289511
Genome browser
AA seq
1317 aa
AA seq
DB search
MSAVKNALKEAKDLIGQKDYKGALKCCKRALNVDKDNYFAWVFVGLCQSELNERDLAKKA
YEKAIAKDAKQLTAWQGLVTFYEKSPNEFLKDKVVALDSLSHLYLEADDRVKYYDFSTKH
WQACLANQDLDSAIKVLQEQIQNLQQSQSNKLKEAKSNLIKLLNQQADLNEEQTKILAGL
LNDTITESDTIQNMESMKNYIKLLYKIRDMEELLSVALRMQVIFPRYNYPYEWICKVYLE
WVTGTLEFTNADLEQVQVYIDKLLELNESSSLGILSLGALKWREKDYKECVKVLTPVLED
KPNPNFYGSYILCDAMIKIKLFANAQRQVEITLNNLTKVKEESTRLMMELRLKKIQIQAL
YHQSSHDKMIQAKDIINHMTNLDAELQVQRLKIGAFLGEDITAQLEDPSLDLPSQDRLLL
QAMASKSLGNCEKAQDLLKSLPHLEDDSEALMLLGQIEFENGQGSQSLARFLKAAKLNPT
NAVPFLYLGHHYRKQGDLDKARKCYQKSFQLNTYSEEAGAALSDIYREQGLDESNLEFLT
SVTKGSTPSRNQWAFLRLGILFLSLDDPTNAILNLQSTIRHDPTNANAWEGLADAYKARG
SYTAALKSYDKVLKLIPSSVYARWQIGTIKHTVGEYEAAIESFRAILATHPDYVPALKGL
GDSLLAQAKDYLLEGINRSVVTHCQESLVHITKAAKHRPDISCLWKLLGEACTLIRGLPA
DIVQISIPSNLAGSGPNKLEKTGVLALGAKCFLRALQINGEDPSVWHDLAVNYDAQATEM
EGQGVPDVRQKAMISIRRAITLEPSGHSHWNVCGVLALRDENYALAQHAFIRSIEAENNA
MAWTNLGILYLMKGEHELANKSFQEAQNHDPSYLRGWVGQALLAETTGYDSEAMDLFRHA
CFLGNEPEASIGYANWVCKTLKSFKDTTSPTHAQSIFCIKNMFGVTVASDCLTRYNEAIR
KDPCALNMLGILLECGRLYKSARIHLEQALAMAQEQGNPEWVEKIHTNLARVCFKSKDFL
GAIAFYSQLPSSFFALCGMAIAQYKVGHFQESYGNYQSALNLAVNSGEKSHVLAAMASIA
YQFQGGEGAKTLLFQSCQLQPPSVPGLFALCVLGIKQKNVQLIQSAIEATQPYEDEPQYV
ADIVGLRAIVSMLLRDDNGVEARMIIARQVHRFPHLAGLWLTLAVHLIHSSTIYASAAKC
AEKCAGLSTLDMRSQSSAATSSNLVTLALMLDQRAAAPPSEEPGNLKKEKVRKAAMRAVH
LFPNDIGAWSLLWLTQGSKDKNLGTFLAAKASSREQEDDSLTPTLRNWLGKLNPILG
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggtaaaaaatgcactaaaagaggccaaggacctaattggtcaaaaagactac
aaaggtgctctgaaatgttgcaaaagggccctaaatgtcgacaaggacaactatttcgcc
tgggtctttgttgggctgtgccaatcggaattgaatgagagagacttggccaaaaaggcg
tatgaaaaagccattgccaaggatgccaaacaattgacagcttggcaaggtttagtcacg
ttctacgagaagtcacccaacgagttcctcaaggacaaagttgttgccttggatagtctg
tctcatctctatttggaggctgacgatcgtgtcaaatactatgacttctccaccaaacat
tggcaagcgtgtctggccaatcaagatttggactctgcgatcaaagtgctccaagaacag
attcaaaatctccaacaatcccaatccaacaagctcaaggaggccaagagtaatctgatc
aagttactcaatcaacaggctgatctgaatgaagagcaaacaaagatcttggcgggcctc
ttgaatgacaccatcactgaatcagataccattcagaatatggagtccatgaagaactac
atcaagctcttgtacaagataagagacatggaggagcttttatcggttgcactaagaatg
caagtcatcttcccgaggtacaactacccgtatgaatggatttgcaaagtctaccttgaa
tgggtcaccgggaccctagagtttaccaacgcggacttggaacaagtccaggtgtacatt
gacaaactcttggagctgaacgagtcctcttctttgggaatattgagcttgggagctttg
aagtggcgtgaaaaggattacaaagagtgtgtcaaggtgctgacacctgtgctcgaagat
aaacccaatcccaatttctacggctcttacatcttgtgcgatgccatgatcaagatcaag
ttatttgccaatgcgcaaaggcaagttgaaatcaccctcaacaacttaaccaaggtcaaa
gaagaatccacaagattgatgatggaactcagattgaagaagatccaaatccaagcccta
tatcaccaatcctcccatgataagatgattcaagccaaggatatcattaaccacatgacc
aacctggatgcagaactccaagttcaacggctgaaaattggagcctttcttggcgaagat
atcacggcacaacttgaagatccgagcttggatctgccttcacaagacagattgcttctc
caggcaatggctagcaagtccttagggaactgcgaaaaggcccaagacctgttgaagagt
ttgccccatttggaggatgattccgaagcgttgatgctcttgggacaaattgaattcgaa
aacggtcaaggtagccaaagtttggcgcgctttttgaaggcggcaaaattgaatccaacc
aatgcggtgccctttttgtaccttggacaccattatcgcaaacaaggtgacctggataaa
gccaggaaatgctatcaaaagagtttccaattgaacacctactccgaggaagctggtgct
gcacttagtgatatctaccgagagcaaggattggatgagagtaaccttgaatttctcacc
tccgtcaccaaaggctcaactcccagtaggaatcagtgggcatttttgaggctcggaata
ctctttctatccctcgatgatcccaccaacgccattttaaacctccaatcgaccattcgc
cacgatcccaccaacgccaatgcctgggaaggtctggcagatgcttacaaagccagagga
tcttacacggcagccctaaaatcatatgacaaagtgctaaagctaatcccttcctctgta
tacgctcgctggcagattggcaccatcaagcacactgtaggggaatatgaggctgccatt
gagtcgttccgagcgatcctagccactcatcccgactatgtcccggccttaaaaggccta
ggtgactcgctcttggcccaagccaaggattatttactcgaagggattaaccggtctgtg
gtgacacattgtcaggaatccctggttcacatcacaaaggctgccaagcatcggcctgat
atatcctgtctctggaaactcctaggagaggcctgtacccttatccgcggtctgccagca
gatattgtccaaatttcaattccgtccaatttggccgggtctggccccaataaattggag
aaaaccggagtgctagctcttggcgccaaatgttttctcagggctctgcagatcaacgga
gaggatccgagtgtttggcatgatttggccgtcaattatgatgctcaggccacggagatg
gagggccaaggggttcctgatgtccgacagaaggcgatgatttcgattaggagagccatc
actctcgagccaagtggtcattcccattggaacgtgtgtggtgtactggctttgagagat
gagaattatgccttggcccaacatgcattcatcagatccatcgaggcggaaaataacgcg
atggcttggaccaatcttgggattctctatttgatgaaaggggaacacgaactcgccaac
aaatcgttccaagaagctcagaaccacgatccaagttatcttcgaggctgggttggacaa
gcattgttggcggagaccacgggttatgattcagaggccatggacttattcaggcacgcc
tgttttctgggaaatgagccagaggcgagcattggttatgctaattgggtctgcaagacc
ttgaagtcgttcaaagacacgacaagccccactcatgctcaaagcattttctgcatcaag
aacatgtttggcgtcactgtggcctccgattgtctcaccagatacaacgaggccattcga
aaggacccgtgtgctctgaacatgcttggaatactcctggaatgtggacgactttacaaa
tccgctcgaattcacttggaacaagctctggcaatggcccaggaacagggcaacccggaa
tgggtggagaaaatccacacaaacttggcccgagtttgcttcaaaagcaaggacttcctg
ggcgccatcgcattttactctcaactcccatcttcgttctttgccttgtgcggtatggcc
attgctcagtataaagtgggtcatttccaggagagctatggaaactatcagtcggctctc
aatttggcagtcaatagtggagaaaaaagccacgtcctggcggccatggcctcgattgca
taccaatttcaaggtggtgagggagccaagaccctcttgtttcaatcgtgccaacttcag
cctccgtctgtgccaggactctttgctctttgcgtcctcgggatcaagcagaagaatgtc
caactcattcaatcagctatcgaggccactcaaccctatgaggacgagcctcagtatgtt
gcggatattgtgggccttcgagctattgtgtctatgttgttacgcgacgacaacggggtt
gaggccagaatgataatcgcccgacaagtccatcgtttcccacatctggccggcctttgg
ctcacgttggccgttcatctgatccattcctccacgatttatgcatctgcagccaaatgc
gcagagaaatgtgcaggactgtctaccttagacatgaggtctcagagctcagccgcaact
tcctccaatttggtcaccttggctttgatgttggatcaaagggcagcagcgccaccgtca
gaagagccgggaaatttgaaaaaggaaaaggtccgaaaagcagcaatgcgcgcggttcat
ctctttccaaatgacattggagcctggagccttctgtggctgacacaagggagtaaagat
aagaatttgggaacgtttttggctgccaaagcctcctctcgagagcaagaggatgacagt
ttaacgccgaccttgagaaattggttggggaaacttaacccaattcttggatga
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