Tigriopus californicus (tidepool copepod): 131882807
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Entry
131882807 CDS
T09700
Name
(RefSeq) ubiquitin conjugation factor E4 B-like
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04120
Ubiquitin mediated proteolysis
tcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131882807
04120 Ubiquitin mediated proteolysis
131882807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tcf04121
]
131882807
Enzymes [BR:
tcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131882807
Ubiquitin system [BR:
tcf04121
]
Ubiquitin ligases (E3)
U-box type E3
131882807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Spore_III_AB
Lipid_DES
Motif
Other DBs
NCBI-GeneID:
131882807
NCBI-ProteinID:
XP_059086055
LinkDB
All DBs
Position
6:complement(11120674..11146529)
Genome browser
AA seq
1162 aa
AA seq
DB search
MDPDQDEIRRKRLARLGGAGSAGANRAQGGDKDQETPKKTDQEGSNNGSSASGGDQITEE
AVQSMDTSPVKSESGVKRHNLVEAHISKSEASFGLANAPAVDIKADTVQNQSMETGASQD
GGAVISSQISNDFDSGVETMMEVDEATSQGSGCGSEKKEFVEKRQRTSSSASYEVTPKQL
RNSLENIFRVKLCSSSSPSSNLDLSDTTQIHKDLADEQVCYNDVIADILTEVIFIMTEGT
YPPGVAKKSAASLQDSIVAYLFNCYERIAEEERTYKKRASIPVVSDLMTSALTQVLQFTS
LVLQNVFDTENNVCGIAHSALAKPLLEQTMPMGFLVDLVSHTSGEWDTFKTIFSPLMESI
IAEARKSSLVDSSYKTPIIAMTELCELKTTGAGSGGQRPFCQLLTELPLWMPGTLSEAVG
REITTTTVLGPFLMISVFAEEDPGVAEKHFSGKQAASLVRSIAQQLQSEMEFMRTSLHRI
FHAILVNSSTREPVLQFLREILKRNQKREQMQVNERQVAGDGFMLNFLSVLQHLASKVKM
DKVDIYYLQREDNLIKLPDDTTRLKMTEAELQEWLKKEDIVVKKRGKGLNFHTDCWYLTL
YAHHLSILPCIRRYQRRIRHLRELQKAVDELEKTETQWKNSPTAMRNRQILKKYQSQVKK
LSKSKACADTGLLDQNLITRCLQFYSSVCEFLLYNMLGKVNKESGCIQKSVHEDISSQLP
LNANDIPNSFAALPEWAIDDLADFLLFAMQYLPQLVSENVDQNILTFLLVLVCSPSFFNN
PYLVSKIVEVFFVINPFVQDRTQELFMRFMSHPVSEEHLPSALMTFYTEVEQTGASSEFY
DKFTIRYHISIIIKSMWDKSQVHKLAIINESKSGKHFVKFINMLMNDTTFLLDEAMDALK
RIHEVQEEMANRAKWIKQTNEQRSNRLRNLAQDERQCKSYLTLARETVDMFHYLSQDIKE
PFLRPELSDRLAAMLNFNLKQLCGTKCKNLKVKTPEKYNWEPKWLLSHLIDLYLHLDSEL
LAAALANDQRSFSMEVFEDAANRMRKSLNRSNSDLEQFRALARKAHEVVLANMKRDEDYD
DAPDEFIDPMMCELMEDPVLLPTSGKIMDRKHINRHLLSTPNDPFNRQPLTEEMLKPDIE
LKEKIEKWKREKTRDRDDVSSS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggatccggatcaggatgagattcggcggaagcgtttggctcgtttgggcggtgctgga
tcggccggggcgaatcgtgcccaaggaggcgacaaagaccaagaaacgcccaagaaaaca
gaccaggagggctcgaacaatggttcatcagcttctggcggcgatcagatcacggaggaa
gccgttcagtccatggatacttcccccgtcaaatcggagagtggcgtgaagcgtcataat
ttggtagaggctcatatttcgaagagtgaggcctcattcggtttggctaatgctccggcc
gtagatatcaaggctgacacggttcagaatcagagtatggagacgggggcaagccaagat
ggcggagcggtgatatccagccagatctccaatgactttgactcgggtgttgagaccatg
atggaagtggatgaagcgacctctcaaggatccggatgcggatcggagaaaaaggaattt
gtggagaagcgacaacgcacttcaagcagtgcctcgtacgaggtgacacccaaacaattg
cggaacagtctggagaatatctttcgagtgaagctttgttcctcgtccagtccatcctcc
aatttggacctctccgatacgactcagattcataaagacctggccgatgagcaagtctgc
tacaatgatgtgatagcggacattctgactgaagttatctttatcatgaccgaaggaact
tatccccccggggtggctaagaaatcggcagccagtctacaagactcaatagtagcatac
ctcttcaattgttatgagagaatcgccgaagaagagagaacgtataagaagagagcctca
atacccgttgtcagtgacttgatgaccagtgctctgacccaagtgttgcaatttacctca
ttagtccttcaaaacgtgtttgacacggagaacaatgtctgtggaatcgctcattccgcc
ctcgccaaacctctcttggaacaaaccatgcccatgggattcttggtcgatctggtcagt
cacacctcaggagaatgggacactttcaaaacgatcttttcccccttgatggagtcaatc
atcgccgaggccaggaaatcgagcttggtggactccagttacaagacacccatcattgcc
atgaccgagctctgtgaattgaagaccaccggtgctggctcagggggacaacgaccgttc
tgccaacttctcaccgaattgcccctatggatgccaggaaccctgagtgaagccgtgggc
cgtgaaatcaccaccaccacggtcctgggcccgtttttaatgatttcggtgtttgcggag
gaggatccgggcgtggctgagaagcatttctcgggcaaacaagcggcttccttggttcga
tccattgctcaacaactccaaagtgaaatggaattcatgcggacttcgcttcatcggatc
tttcatgccattcttgtcaactcaagcacgcgtgaacctgtccttcaatttctacgagag
atcctgaaaagaaatcagaagcgagagcaaatgcaggtgaatgagcgtcaagtggctgga
gatggattcatgctgaactttctatcggttctgcaacatttggcctccaaggtcaagatg
gacaaagtagacatttactacctgcaacgcgaagacaacctgatcaaattgccagacgat
actaccagattgaaaatgactgaagcagaacttcaagagtggctaaagaaagaagatatt
gtggtgaagaaacgcggcaaaggactgaatttccatacggactgttggtatttgaccttg
tatgcccaccacttatccatcttaccctgcattcggaggtatcagagaagaattcgacac
ctaagagagctgcaaaaagccgtggacgaattggaaaagaccgaaacccagtggaagaac
tcgccaacggccatgcgaaatcgacaaatcctaaagaaataccaatctcaagtgaagaaa
ctgagcaaatccaaggcatgtgcggacaccgggctcttggatcagaatctgatcacccgc
tgccttcagttctactcttccgtgtgtgaattcctgctgtataacatgcttggaaaggtg
aacaaggagagtgggtgcattcaaaagagtgtgcatgaggacatctcgtcgcagctgccc
ttgaatgcgaacgatattcccaacagctttgccgccctgccagaatgggccattgatgac
ctggccgattttcttctctttgccatgcaatatctgccacaacttgtgtcagagaacgtg
gaccaaaatattctgacgtttctcttggtcttggtatgctccccatcgtttttcaacaat
ccttacttggtgtccaagattgtggaggtgttctttgtgatcaatcctttcgtgcaggat
cggacccaagaattgttcatgcgcttcatgtcccatcccgtatcggaggaacatctacct
tcagctctaatgacattctacacagaggttgaacaaactggtgcttcatcggaattctac
gataaattcaccattcgttaccacatctcgatcatcatcaagtccatgtgggataagagt
caggtgcacaaactcgccatcatcaatgaatccaaatccggaaaacactttgtcaagttt
atcaacatgctcatgaatgacaccacattcctattggatgaggcaatggacgccttgaaa
cgtattcacgaagtccaagaggagatggccaatcgagcaaaatggatcaagcaaaccaac
gagcaacgaagcaatcggcttcggaatctggcccaagacgagcgacaatgtaaatcgtat
ctgaccttggctcgagaaacggtggacatgttccattatctgtcacaagacatcaaggaa
ccattcctaaggcctgagttatcagatcgtctggcagccatgctcaatttcaatttgaag
caactctgtggaacaaagtgtaaaaatctcaaggtaaagactcccgagaaatacaactgg
gaacccaaatggcttttgagccatttaattgatctatatctgcatttggattcggaactt
ctggccgctgctctggccaatgatcaacgctcattttccatggaagttttcgaggatgct
gccaatcggatgagaaagtcgcttaaccgttccaattctgacttggaacagtttcgggcc
ttggccaggaaagcccacgaggtggtcttagcaaatatgaagcgggatgaggactatgac
gatgccccggatgaatttattgacccgatgatgtgtgagctaatggaagaccccgtgtta
cttccgacgtcagggaaaatcatggaccggaagcacatcaacagacatttgctctccact
cctaacgatccgtttaaccggcaacccttaacggaggaaatgttaaagccagacatcgaa
ttgaaggagaagatagagaagtggaaacgcgaaaagaccagggatcgcgatgatgtcagc
agctcttaa
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integrated database retrieval system
