Tigriopus californicus (tidepool copepod): 131882897
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Entry
131882897 CDS
T09700
Name
(RefSeq) splicing factor 1-like
KO
K13095
splicing factor 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131882897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131882897
Spliceosome [BR:
tcf03041
]
Complex A
Other components
Complex A specific factors
131882897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
KH_12
zf-CCHC
zf-C2H2_10
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
131882897
NCBI-ProteinID:
XP_059086165
LinkDB
All DBs
Position
7:1460120..1464735
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AA seq
729 aa
AA seq
DB search
MSGGRYHSSGANNTPLGAIRPAFPPSVPTGGSSLLKPNYLSGGGLAPGPPLGGGGVGASD
ASDDVKKKLALETILKFNAEQAKKRAALGESVEPPPPPVVGGMPGMPGAGPLAAGSFGAP
FQVPYMNAPVDDGSSLGGGGLKREHDSEEAAARAERRKKRKSRWGGGEDEKTFIPGMPTM
MPQGLSKEQEEAYLLQLKIEDTSRRLRSGDFGIPINPEDRSPSPEPIYSSDGKRMNTREY
RKRRELEELRHNSITRMVDINPEYKPPPDYKPPMVKVSDKVMIPQDEHPDINFVGLLIGP
RGNTLKAMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGEDEPLHAYVTANNPEAVKKAV
DKIKEIIKQGVEVPEGHNDLRRTQLRELALLNGTLREGDGPRCTNCGASDHKSWQCQDKP
NYTNNIICSMCGGAGHIARDCQQRRHGGEEYDEMGEGSESGGGGGGGGVGGEGKTKMDDE
YMSLMAELGEGPPPPAPAPDRPSSKPWQRGSGNVFTPRHQAPRAIMGPRGGGGGGPPPPP
PGEYGPPSHSSGWSSGGGGGKPPNLMQQSVPPPWHQGGSGGGGSWNQPPPPGAGPPPPPP
PGTSGPRITAPPPSGGWGSQSTGAGGYGMPPPYMGGPPPPPGSSSSGGSGYSMASQWGSA
PPPPPGSSAPPPRPPPGAAAYWQNAGWSQGAMLPPPGAPPPPPPGANGSPNGLNISRLIA
APPPPPPSS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggtcgttaccactcctccggggccaacaatacgcccctgggcgccatccga
cccgcctttccgcccagtgtacccaccggaggctcttctctcctgaaacccaattacttg
tcaggaggtggtttggcccctggtccgccgctagggggcggtggtgttggcgctagtgac
gcctctgacgatgttaagaagaagctagccttagagactatcttgaagttcaatgctgag
caagccaagaagcgtgctgcgctgggcgaatccgtagagcctccgccaccacctgtggtg
ggtggcatgcccggcatgccgggcgcgggccccctagccgccggctcttttggtgcgccc
tttcaggtgccctatatgaatgcaccagtggatgatgggagtagcctaggaggtggtgga
ctgaagcgtgagcatgattcggaagaggctgctgcgcgggctgagcgccggaagaagcgt
aaatcgcgctggggtggcggtgaagatgagaagacatttattcccggcatgccaaccatg
atgcctcaaggcctaagcaaggagcaggaggaggcctatctcttgcaactgaagattgag
gatacgtctcgtcgattgcggagcggtgattttggcattcccatcaacccagaagacagg
tctccctcgcccgagccaatctattcgtcggatggaaagcggatgaacacacgagaatat
cgcaaacggagagagttggaagagctgcgacacaattcgatcacgcgcatggtagacatc
aatcctgagtacaaaccccctccagactacaagccaccgatggtgaaagttagtgacaag
gtcatgattccacaagatgaacatccggacatcaactttgttggtttgctcattggacca
cggggcaacaccttaaaagcgatggaaaaggatacgggtgccaagatcatcattcgaggc
aagggatccgtcaaggagggcaaagtgggaaggaaagatggacaacccttgcctggagaa
gacgaaccgcttcatgcgtatgtgactgccaataatcctgaggcggtgaagaaagccgtg
gataagataaaagagatcattaaacaaggtgtagaagtgccggaaggtcataacgacctc
cgaagaactcagttacgagagctggctctgctaaacggcaccctaagagaaggcgatgga
ccgcgttgcaccaattgtggtgcgtccgaccacaaatcctggcagtgtcaagacaagccc
aactacaccaacaacatcatctgttccatgtgcggaggagccggacacattgccagggat
tgccaacagcgacgacatggaggtgaagagtacgacgaaatgggcgaaggtagtgaaagt
ggcggtggcggaggaggaggaggagtaggaggagaaggcaagaccaaaatggatgacgaa
tacatgtctctgatggctgagttgggcgaaggccccccgcctcctgctccggcacctgat
cgcccttcgtctaaaccatggcagcgaggatccggcaatgtatttactcccaggcatcaa
gcaccccgtgccatcatgggacctcgaggaggagggggtgggggtccaccccctcctcca
cccggggaatatggtcccccttcgcacagttcaggctggtcaagcggaggaggaggagga
aagccgcccaatctcatgcagcaaagcgtacctcccccttggcatcaaggtggtagcgga
ggcggtggtagctggaaccaaccccctcctcctggagcgggtcctccgcccccgccacca
ccagggacgagtggaccacggattacagccccaccgccctcgggaggatggggtagtcaa
agtactggagctggtgggtatgggatgccccctccttacatgggtggtccacccccaccc
ccgggaagttcaagttcgggcggtagtggatacagtatggcctcgcaatgggggagtgcc
ccaccgccgcccccaggctctagtgccccgcctccacgaccaccacctggggccgctgct
tattggcagaatgcgggttggtcgcaaggggccatgcttccgcctccaggcgccccacct
ccgcccccacccggagctaatggaagtcccaatggtctgaacatttccagattgatcgca
gccccgcccccacctccacctagctcttaa
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