Tigriopus californicus (tidepool copepod): 131882972
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Entry
131882972 CDS
T09700
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03030
DNA replication
tcf03410
Base excision repair
tcf03420
Nucleotide excision repair
tcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131882972
03410 Base excision repair
131882972
03420 Nucleotide excision repair
131882972
03430 Mismatch repair
131882972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcf03032
]
131882972
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131882972
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131882972
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131882972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
Rad17
AAA_5
RuvB_N
AAA_30
AAA_22
AAA_14
AAA_18
RNA_helicase
nSTAND3
AAA_17
Sigma54_activ_2
NTPase_1
TIP49
AAA_11
AAA_24
AAA_assoc_2
AAA_16
AAA_33
AAA_7
Motif
Other DBs
NCBI-GeneID:
131882972
NCBI-ProteinID:
XP_059086267
LinkDB
All DBs
Position
1:7275454..7278174
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AA seq
633 aa
AA seq
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MMPGATRDIRSKTTHRPVVSTPPAKDTKRDHRAAHPGAASPAAKRLKIEPSALLEDPARP
SQLWVDKYKPVNLKHVIGQQGEKSNLRKLQTWLQHWPRYHLGGAKPPARPPPWNATSDTG
AWAKMALLSGPPGVGKTTTAYLVSRELGFDVMEMNASDARSKKLLEQNVAVAMSNTSLAS
GSKKRVLLMDEVDGMAGNEDRGGIAELIQLVKKSQIPVICMCNDRNHQKIRSLANYCFDL
RFQRPRVEQIKGAMMSIIFKEKINITPDALTEVIAGCNQDVRQVLHHLSLIKARESSIKM
TGTEAKTEADRSKKTSIKVGPFDVVRRVFSAKEQEGMSLMDKSDLFFQDYSLGPLFTQEN
YLLHVPKAAKGDPKATMDLVSKAADSFCDGDLTSGAIRSRNAWNLLPIQAMFSSVIPGEY
MSGYMSGQPQFPTWFGKYSKQNKFDRILQELQMHTRLSAGVTKQAMNMEFSQFLRGAIVN
PMLLKGSEGIPESVEVMKKYSLLREDLDNILEIGQWPGQDNPMKYVDSKTKAAFTRAYNK
EIVLPYSNAIGSLKKGKSAATSVEINPEALEEDDERESDDEDDDDISKDAMIKAKPKKPT
KGKSESGATSSSARGGKATTSRGKGTARGRGKK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccggagccacacgggatatccgatccaagaccacccaccgacccgtggtcagc
actccgccggctaaagacaccaaacgggatcatcgagccgctcatccgggggccgcctca
cccgccgccaaacgcctcaaaattgaaccttcggccttgttggaagatccggcgcggcct
tcgcagctatgggtggataagtacaagcccgtaaatttaaagcacgtcatcggccaacag
ggcgagaaaagcaacctgcgcaagcttcagacttggttgcaacattggccgcgttaccac
ttaggcggggccaaacccccggcccgccctccgccctggaacgccacgtccgatacgggg
gcctgggccaagatggccctgttgtcgggtccccccggggtgggcaaaaccaccaccgcc
tacttggtcagtcgagaactgggctttgatgtcatggagatgaacgcctcggacgcccgc
tcgaaaaagctcttggaacagaatgtggccgtggccatgagcaacacctctttggcctcc
ggttccaaaaaacgggtcttgctgatggacgaagtggacggcatggcaggcaacgaagat
cgaggcggcatagctgaactcatccagttggtcaagaaatctcaaatacccgtgatttgc
atgtgtaacgatcgaaaccatcagaaaattcgtagcttggccaactattgtttcgatttg
cgatttcaacgcccgcgcgtcgaacagattaaaggtgccatgatgtcgatcatatttaaa
gaaaaaattaacatcacgccggatgccttgactgaagtgattgccggttgtaatcaagat
gtgcggcaagtgctccatcacttgtccctcattaaagcgcgggagagttccatcaagatg
acgggcaccgaagccaaaactgaagcagatcgatccaagaaaacctccatcaaagtgggt
ccttttgatgtggtgcggagagtgtttagcgccaaagagcaagaaggcatgtcgctcatg
gacaaatcagatttgttcttccaagattacagtctgggtcccttgtttacacaagaaaac
tatctacttcatgttcccaaagcggccaaaggtgatcccaaagccacgatggacctggtt
agtaaagcagcggattcattctgtgatggtgacttgacaagtggagcgattcgatcacgg
aacgcttggaatctattgcccatccaagccatgttctcgagcgtgattcctggggaatat
atgtcgggctacatgtcgggtcagccccaatttccaacatggtttggaaaatattcgaaa
caaaataaattcgaccggattttgcaggagcttcaaatgcacacaaggctgagtgcgggt
gtaacgaagcaagccatgaatatggagttctcccagtttctacgcggagcgattgtaaat
cccatgttacttaaaggctcggagggcattcccgaatccgtagaagtgatgaagaagtat
tccctcttgagagaagatttggacaatattctagaaatcggtcagtggccaggtcaagat
aacccaatgaagtatgtcgattccaagaccaaggctgctttcactcgagcttacaacaaa
gagatcgttctgccctattcaaatgctattggatccctgaagaaaggtaaatcggcagcg
acttccgttgagataaatccggaggcattggaggaagatgacgagagagagagcgatgac
gaggatgatgatgatatctcgaaagacgctatgataaaagcgaaaccgaagaaaccaacc
aagggtaaatcggagagtggggccacgtcgtcaagcgctcgtggaggcaaagctaccact
agtcgagggaaaggcacggcccgtggaaggggcaaaaaatga
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