Tigriopus californicus (tidepool copepod): 131883044
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Entry
131883044 CDS
T09700
Name
(RefSeq) ATP-dependent RNA helicase Ddx1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131883044
03016 Transfer RNA biogenesis [BR:
tcf03016
]
131883044
Enzymes [BR:
tcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131883044
Spliceosome [BR:
tcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131883044
Transfer RNA biogenesis [BR:
tcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
131883044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
DUF7384
Motif
Other DBs
NCBI-GeneID:
131883044
NCBI-ProteinID:
XP_059086357
LinkDB
All DBs
Position
7:9620831..9624144
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AA seq
721 aa
AA seq
DB search
MTAFEEFGVLPELGAAVDHMGWSLPTDVQSEAIPMILGGGDVLMAAETGSGKTGAFCLPV
LQITWESLKALRAGTPTARSTPGSEDATPTSEWRMSVLDRSPALAISADGLRCQSRHPKE
WHGCRAGLGVAGAGQWYFEAYVEDEGLCRVGFATGQAALDLGTCPHGYGFGGTGKKSNNR
QFDDYGQAFGQADVLGCYLDLDHGEIAYTKNGVDLGLAFTLKSHQLKQAFYPAVVLKNAE
MRFNFGDQPWKYQPVEGYRGFNQSPETVMVVNDKQQNVVDRKIAANSPQAIIIEPSRELA
EQTQKQIAQFKTKLPHPPIREHLVVGGVSIQDQLKAFKEGVDIVVATPGRLEDLISGGKL
SLKQCRFFILDEADALLKAGYEKLIHRLYEKIPKMTSDGTRLQMIVCSATLHDFDVRRLA
DQLMHFPTWVDLKGQDSVPETVHHVVAWVDPAKDQDWRKLLKQVPTDGVHQRDDKLAGDK
NSRSEAVKVLKAEYCLKAIEKHQIDYGLIFCRTKLDCDNLEKYLKKRHSCVCLHGDRKPT
ERRDNLQLFKDKAVNFLICTDVAARGIDVKGLPFMINLTLPDDKANYVHRIGRVGRAERM
GLAISLVSQEPEKVWYHGEWCKSRGRNCSNTNTVERGGCCKWFDEKQMLADIEEHLGVTV
PQVGTDFEIQTNEFDGKVVYGKKLEDKGTGYRGHADVLAPTLAKLQCLEKDAQLMFLANY
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacggcctttgaggagtttggcgtgttgcccgaattgggcgcggccgtagatcacatg
ggatggagtttgcccacggatgtgcaatctgaggccattcctatgattttaggcggcggg
gatgtgctcatggccgccgaaaccggatcgggcaagaccggcgccttttgtttgcccgtc
ctacaaatcacgtgggagagcctcaaagccttgcgtgccggcacgcctaccgcccgctcg
acccccgggtccgaggatgccactccgacctcggaatggcgcatgtccgtgctggatcgc
agtccggccttggccatttcggccgatggtttacgttgccaaagccgacatcccaaagaa
tggcacgggtgtcgcgccggattgggcgtggcaggggccggtcaatggtatttcgaggcc
tatgtcgaggatgaaggcttgtgtcgcgtgggctttgccaccggtcaggccgccttggac
ctaggcacctgtccgcatggttacgggtttggcggtacgggcaagaaatcgaacaaccgc
cagtttgacgattacggacaagccttcgggcaagccgatgttttaggatgctatttggat
ctggatcacggcgaaatcgcttacactaagaacggtgtggatttgggactggcctttact
ttgaagtcgcaccaacttaagcaagccttttatcctgccgttgtattgaagaatgcggaa
atgcgattcaattttggtgatcagccttggaagtaccagcctgtcgaaggctaccgcggt
tttaatcaatccccagagactgtgatggtagtgaatgacaagcaacaaaatgtggtggat
cggaagatcgcggccaattcgcctcaagccattatcattgagccctcgcgagaattagcc
gaacaaacgcaaaagcagattgcccaattcaagaccaaactgcctcatcctcccattcgc
gagcatctcgtggtgggtggggtgagcattcaagaccaattaaaggcctttaaggagggc
gtcgacattgtcgtagcgactcccggtcgtctagaagacctcattagtggtggcaaattg
tccttaaagcagtgccgtttcttcatcttggacgaggccgacgccctgctcaaggccggc
tatgagaagctcatccatcggttgtatgaaaagatcccgaagatgacctcggacggcact
cgcttacaaatgatcgtgtgttcggccacgttgcacgactttgacgtgagacgcttggcc
gaccaattgatgcatttcccgacttgggtcgatttaaaaggtcaagattcggtcccggaa
acggttcatcatgtcgtggcttgggtcgatccggcaaaggatcaggattggcggaagctc
ctgaagcaagtgcctaccgacggggtgcatcagcgagatgacaagttggcgggagataaa
aattcccgctcggaagcagtcaaggtattgaaagcggagtactgcctaaaagccatcgag
aaacatcaaatcgattatggcttgatcttttgtcgaactaaactcgactgtgataacttg
gagaaatatctcaaaaagcggcattcttgcgtgtgtcttcacggagatcgaaaacccacc
gagcgacgcgacaatctgcaattgtttaaggataaagcggtgaatttccttatttgcacg
gatgtggctgcacgaggcatcgacgtcaaaggtcttccgttcatgatcaacttgacctta
ccagatgataaggccaattacgttcatcgcattggccgcgtggggcgggcagaacgaatg
ggattagctatttcgcttgtgtcccaagagcccgaaaaggtctggtatcacggcgagtgg
tgcaaaagccggggcagaaattgctcgaacactaataccgtcgaaaggggtggctgttgc
aaatggttcgacgagaagcagatgttagccgatattgaggagcatcttggggtaaccgtt
cctcaagttggcacggatttcgagatccaaaccaatgagtttgatgggaaagtagtgtat
ggcaaaaaattggaagacaaaggcactggttatcgaggacatgctgatgtgttggcacca
accctggccaaactccaatgtttggaaaaggacgctcaactcatgtttctggcaaattat
atttaa
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