Tigriopus californicus (tidepool copepod): 131883211
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Entry
131883211 CDS
T09700
Name
(RefSeq) gem-associated protein 5-like
KO
K13133
gem associated protein 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131883211
03041 Spliceosome [BR:
tcf03041
]
131883211
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131883211
mRNA cycle factors
P-body specific factors
131883211
Spliceosome [BR:
tcf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
131883211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIG_2nd
TPR_GEMI5
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
ANAPC4_WD40
Beta-prop_HPS5
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_Aladin
WDR55
Beta-prop_EIPR1
Beta-prop_WDR3_2nd
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WD40_RFWD3
ASA1
Beta-prop_NOL10_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
DNAI3_WD
Beta-prop_SCAP
Beta-prop_RSE1_2nd
Tricorn_2nd
Beta-prop_WDR75_2nd
Beta-prop_SPT8
PAC11
Beta-prop_DCAF4
TPR_IF140-IFT172
Fe_hyd_SSU
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
131883211
NCBI-ProteinID:
XP_059086588
LinkDB
All DBs
Position
7:10901607..10905235
Genome browser
AA seq
1028 aa
AA seq
DB search
MSSTVWGCPPSGNWHCPQALSGSTHHRVFMTARQDVVLIDAVQTVGTPPRPQIKILRCAP
DKVKLLAVNVSSDGRRVGAAGEEGTIYWWSMEGAATALAGRVVRSHTDHQALAKQKCRVQ
SLGWSPVEPELLASADESGHVVVWDTRVNARRSIPLGKHVVAVLAWSPHHKDVLAVGCRH
GLVLIVGLNGPGKILSKIRAHDEDIQSISWCPDMGNLFTHPGDSSHSDSLLAVGSKEKTI
SIWSKNTSKLVAKLILKPALAKAAKTNFYLTSLWAQPDVIVSAGSQGEVLKWDLKQATPD
AHGVFQLQEVGFHTKVLHREHFRIVFSMTMSGTSLVSLGQDRQIVSFDLATEKLNYALPT
MGGWVYDLALNPLDANVIAMATGDGLIRVWRSHSSKEAFDTTTLALKNSQTKVTTLAWHP
RYDNFLAFGTDEGRIGTMDTQKVKNLPTFLTFKHRGQVYSLVWGTKPSSDQSEVDLESDK
PVLYSCGDNMIMIHNTKNPNSPPVDLEKLIQSTNDLTRTPPNRSELIFHGDKGRFLALGS
DDGSVEVFSMPEVKLLCVIKVHQKLIQCLRFHPMYLNECEEESSMSNCLAIASNESVIRI
VDLKEPNNSSSIIATPTYSLTGHHSRVIAMAWSPHTEGMLVSVSYDTTVQIWDVRSEVGL
ANFSGHEGRLVTCLWSPSDPDVILSGGEDCSLLIWKISEQTEKMPVKKVDKPRIKREVVS
HNSANSKEASPISGEVSSSNGGSAPETQISLGGGEKSKRTKKQKVVYFPHCLSDENRSRG
KAGSDALKIAESTLSTLSGRDSLAFFDDDQAMEQLIEKESRAHLTENNLSAFSHMKLWTG
DYREVLKQLISLGKLTDWHVSVALSCDYGLWQEACEAYARQLTHDDDHVKAASYLLLLNK
VPEAIRTLAEAHLYREALALARVRLPKDSPLIQDLYRDWAKKSHHNGAYDLAGRAWAAAG
EPLKAAGALAKLPEADNLRAGALFTRQADENDRAKVLAAQSLEAAKSQSNTGCMEKLLIE
FPELAASQ
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgagctccacggtatggggctgcccgccctcgggcaactggcactgtccgcaggctctc
agcggctccacccaccaccgggtcttcatgacggcgcggcaagatgtggttttgatcgac
gccgtccagaccgtgggcacgccccctcggcctcaaatcaagatcttgcggtgtgcaccc
gacaaggtcaagctcctggccgtgaatgtgagctcggacgggcggcgggtaggcgcggcg
ggtgaagaaggcacgatctattggtggtcaatggagggcgcggccacggcattggcgggg
cgggtggtgcgcagccataccgaccatcaggccttggccaaacagaaatgtcgagttcaa
agtcttggttggtccccggtggaacctgaattgttagcctcagccgatgaaagtgggcat
gtggtagtgtgggacacccgtgtcaatgcccgacgatctattccgttaggcaaacatgtc
gtggccgttttggcctggagcccgcatcacaaagacgtattagccgtgggttgtcgacac
ggtttggtcttgatcgtgggtttgaatggcccgggaaagattttatccaagatccgggcc
cacgatgaggatattcaaagtatttcatggtgtccggacatgggtaacctattcacccat
cctggggattcatcccactccgattctttattggccgtcggttccaaagagaagacgata
agcatctggtcgaagaatacgagtaaactcgtggccaagttaattttaaagcctgccttg
gccaaggctgccaaaaccaatttttacttgaccagtctttgggctcagccagatgtgatt
gtgtccgctggatctcaaggcgaagtcttgaagtgggacttgaaacaggccactccagat
gcccatggtgtatttcaactccaggaggtgggatttcataccaaagtgttgcatcgggag
catttccggatagtgtttagtatgaccatgagtgggacgtctttggtctctttgggtcag
gatcgacagatcgtgtcctttgatttggccacggagaagctgaattatgctttgcccacg
atgggtggctgggtctatgatctggccttgaaccctttggatgctaatgtgatagccatg
gccactggtgatggattgatccgggtgtggcgttctcattctagtaaagaagcctttgat
accaccactctagcgttaaagaactcacaaaccaaagtcacgaccttagcttggcaccct
aggtatgataattttttggcctttggaaccgatgagggccgcattggcacaatggatact
caaaaggtcaagaatctacccacttttctcactttcaaacaccgtggacaagtgtattcg
ttggtttggggcacaaaaccatcttcagaccagtcagaggttgatttggagtccgataaa
cccgtgctctatagttgtggcgacaacatgatcatgatccataatacaaaaaatcccaac
agtcctcccgtagacttggaaaaattaatccagagcaccaatgatctcacgcggactccg
ccaaatcgctcagaactaatttttcacggagataaaggccgtttcttggccttgggatcg
gatgacggaagcgtggaagtgttttccatgcccgaagtcaaactcttatgcgtaatcaag
gttcaccaaaagctcattcaatgcctccgatttcatcccatgtacctgaatgagtgtgag
gaagaatcgtccatgtccaattgcttagccatcgcgtccaatgaatctgtgatccgaatc
gtcgacttaaaagagcccaacaattcgagttccatcattgccacacccacttactcgctc
actggtcatcattcccgggtcattgccatggcgtggagtccccatacagaggggatgttg
gtatccgtttcttatgacaccaccgtgcaaatttgggacgtccgatcagaagtgggattg
gccaatttttccggtcatgaaggccgtctagttacctgtttgtggagtcccagtgatcca
gatgtgatcctgagtgggggagaagattgttcgcttttgatatggaaaatctcagagcag
acggagaagatgcccgttaagaaagtggataaacctcggatcaaaagagaagtggtttcg
cataattcggcgaattcgaaagaagccagtccaatcagtggagaagtcagcagctccaat
ggaggctctgctcctgaaactcaaatctccttggggggaggggaaaaatccaaaagaacg
aagaagcagaaagttgtttatttccctcattgtttgtctgatgaaaaccgatctcgagga
aaagccggctcagatgctctcaagattgccgaatcgaccctctctactttgtcgggacga
gattctttggccttttttgacgatgatcaagctatggaacaactgattgaaaaggaatct
cgagcccatttgacggaaaacaacctgagtgcgttctcccacatgaaactttggaccgga
gattatcgagaggtgctcaagcaattgatctccttggggaaactcacagattggcacgtg
tccgtggccttgagttgcgattatggtctttggcaagaggcttgcgaagcctatgctcgg
caattaacccatgacgacgaccacgtcaaagcagcctcatatctccttctcctcaacaaa
gtcccggaagccattcgcactttagctgaagctcatctatatcgagaagctttggctttg
gccagggtacgtctacccaaagattcgccgttgattcaggatctctatcgagactgggct
aaaaaatctcaccacaacggagcctacgatttagctggacgagcttgggctgcggctggg
gagcctttgaaggccgccggggctctggctaagttacccgaagctgataatctgcgggca
ggtgctttgttcacgcggcaagcggatgaaaacgatcgagccaaagtcttagccgctcaa
agccttgaggcggcaaaatctcaatcgaatacaggttgtatggaaaaactgttgattgag
ttcccggaattggcggcaagtcaataa
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