Tigriopus californicus (tidepool copepod): 131883433
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Entry
131883433 CDS
T09700
Name
(RefSeq) DNA polymerase delta catalytic subunit-like isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03030
DNA replication
tcf03410
Base excision repair
tcf03420
Nucleotide excision repair
tcf03430
Mismatch repair
tcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131883433
03410 Base excision repair
131883433
03420 Nucleotide excision repair
131883433
03430 Mismatch repair
131883433
03440 Homologous recombination
131883433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcf03032
]
131883433
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131883433
Enzymes [BR:
tcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
131883433
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
131883433
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
131883433
MMR (mismatch excision repair)
DNA polymerase delta complex
131883433
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
131883433
NCBI-ProteinID:
XP_059086923
LinkDB
All DBs
Position
1:13390397..13397963
Genome browser
AA seq
1092 aa
AA seq
DB search
MPKGKYQVQPPTAATPGKRPKLKGQPEDDETVAGSEPDLAMELDLESEPALTEDVTQAWP
RPAWPAQLSGARTESALVFQQIEIDHYLGHSMPGMPGAQSGQVPIMRMYGVTQEGHSVCA
HVHGFHPYFFVLAPPGFTKNNLGDFRLSLNRAVQEDSKSKDTPKDCVLNVELMMKSTIYG
FQGNKMSQFLKITMAVPRMIAAAKRLLDRNEVKFQSFNLSSPLSAFEANIDFEIRFMADT
KVVGCNWIEFPAGKYKIRDGKSLFGKFMSRCQMEVDIAWDDFISHAPDGDWSDVAPFRIM
SFDIECAGRKGIFPEPEKDPVIQIASMVIRQGDPEPFIRNVFTLNTCGEIVGSVVISCKT
ETELLDRWADFVRQVDPDILTGYNINNFDFPYLLNRAKHLNVRNFNLLGRVIDVKSVVKD
SILQSKQMGRRENKVINIDGRVQLDLLLILVRDYKLRSYTLNAVSYHFLQEQKEDVHHSV
ITDLQNGNAQTRRRLAVYCLKDAYLPLRLLEKLMCVINYMEMARVTGVPLSYLQTRGQQI
KVISQLIRKTMEVDVLIPTYQSQQGDDNFEGATVIEPKRGYYDKPIATLDFSSLYPSIMM
AHNLCYTTLLQPGAIDKYNITPEQYVKTPSGNFFVKSSVRKGLLPEILESLLGARKKAKA
DLKKETDPFRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEQTK
NEVEAKYTMANGYKFDADVIYGDTDSVMVKFGVDNVKDAMALGEEAAAFVSQKFISPIKL
EFEKVYFPYLLINKKRYAGLYFTQPDKYDKMDCKGIETVRRDNCQLVARLMNDCLQKILI
DRDPEGAMEYAKQNISDLLCNRVDISQLVITKELTKTDKDYTAKQAHVELANKMKKRDAG
SAPKLGDRVPYVIVAGAKGTPAYQKAEDPIYVLENNIPIDAQHYLTNMLAKPLLRIFEPI
LGEHKAESTLLRGDHTRTKTVVTSKVGALSAFTKKRATCIGCKVPLAKDTDAVCGHCKPK
ESALYQKHISEMSALEERFSRLWTQCQRCQGSLHEEVLCTSRDCPIFYMRKKIQIDLTDK
DKILQRFGNPEW
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaggcaaatatcaagtccagccgccgacggcggctaccccgggcaagcggccc
aaactcaagggccagcccgaggacgatgagacggtcgctggttccgagccggacctggcc
atggaactggacctggagtcggagcccgcgctaacggaagacgtgacccaggcctggccc
cgacccgcctggcccgcccagctgtccggggccaggactgagtcggccttggtgttccaa
caaatcgagattgatcattatttgggacattcgatgcccggcatgcccggcgctcaaagc
ggccaagttcctatcatgcggatgtacggcgtcacccaagagggtcactcggtctgcgct
cacgtccacggttttcatccctatttctttgtgcttgctccgcccggattcaccaagaac
aacttgggcgacttccggctttctttgaacagggccgttcaagaggactccaagtctaag
gatacgcccaaagattgcgtactgaacgttgagctcatgatgaagtccaccatctatggc
ttccaaggcaacaagatgagccagttcttgaagatcacaatggccgtgccccgaatgatc
gcggcggctaagcggcttctggaccgtaacgaggtcaagttccagagcttcaatctcagc
tcgcccttgagtgcgttcgaggccaacattgactttgagatccgcttcatggccgatacc
aaagtggtggggtgcaactggatcgagttcccggcgggcaaatacaagattcgcgatggg
aaaagtttgttcgggaaattcatgtcccgttgccagatggaggtggatatcgcttgggat
gacttcatttctcacgctccggatggcgattggtcggatgtggctccattccggatcatg
agttttgacattgaatgtgccgggcggaaaggcattttccccgagccggaaaaagatccc
gtcatccagattgcctccatggtcattcgacaaggagatccggagccgttcattcggaat
gtatttacacttaacacctgtggtgaaatcgtggggagcgttgtgatctcgtgcaaaaca
gagaccgagctcttggaccgatgggcggatttcgttcgtcaagtggatccggatattttg
acgggctacaacattaacaactttgattttccatacttgctgaatcgggccaagcatttg
aatgtccgaaatttcaacctcttgggacgagtgatcgatgttaagtctgtggtcaaggac
agcattcttcaaagtaagcaaatgggtcgacgcgagaacaaggtcatcaatatcgacggc
cgagttcaactggatcttcttctcattctggtccgcgactacaaattgagaagctacacg
ctgaatgcggtgtcctatcacttccttcaggagcaaaaagaggatgtgcatcattccgtg
atcacggacctgcaaaacggcaatgcccaaacccgtcgtcgattggcggtgtattgcttg
aaagacgcttatttacccttgagattgctcgaaaaactcatgtgtgtgattaactacatg
gaaatggccagggtcacgggtgtacctctctcctacctccaaacccgaggtcagcaaatc
aaggtcatctcccaattgattcggaagaccatggaagtggatgtcctcatcccaacctac
caaagtcaacaaggggacgataacttcgagggtgcgaccgtgattgagcccaaacgagga
tattacgacaaaccgatcgccaccttggatttctcgtctctgtatccgtccattatgatg
gcgcacaatttgtgctacacaacgttacttcagcctggagccatcgacaaatataacatc
acgccagagcaatacgtgaaaacgccctctggaaactttttcgtcaagtcatccgttcgc
aaaggtttacttcctgagattctggaatcactcctcggagctcgaaagaaggccaaggct
gacctgaaaaaggagactgatcctttccgtaaaaaggtattggatggtcgacaactggcg
cttaaaatcagtgccaactctgtttatggatttacgggagcacaagtcggaaagctacct
tgccttgagatctctcaaagtgtcacggcttttggtcgtatgatgattgaacaaactaaa
aacgaggtagaggccaagtacacaatggccaatggctacaagttcgacgcggatgttatt
tatggcgacacggattcggtcatggtcaaattcggcgtggataatgtaaaagatgccatg
gccttaggcgaagaagcggcagccttcgtttcgcagaagttcatcagtcccatcaagttg
gagttcgaaaaggtctacttcccgtatttgctcataaacaagaagcgctatgctggcttg
tacttcacgcaacccgacaaatatgacaagatggattgcaaaggcattgaaaccgtcaga
cgagataactgccaattagtggctcgactcatgaacgattgcctgcagaagatcctcatc
gatcgggacccagagggagccatggagtacgccaaacagaatatttccgaccttctgtgc
aaccgagtggacatctctcaactggtgatcaccaaggagctcaccaagacggacaaggac
tacactgccaagcaagctcacgtggaattggctaataagatgaagaagcgcgatgccgga
agtgctcccaaattgggagatcgtgtgccttacgtgattgttgccggagccaagggtacg
cctgcttatcagaaagccgaggatcctatttacgttttggagaacaacattcccattgac
gctcaacattatctcacgaacatgctggccaaacccttactgaggatttttgagccgatt
ctgggcgagcataaagccgaatccaccttgctgagaggcgatcatactcgcaccaaaact
gtggtcacctccaaagttggggccttgtcggctttcaccaagaaacgcgccacttgcatt
ggatgcaaggtgcctttggccaaagatactgatgccgtttgcggtcattgtaagcccaag
gaaagtgccttgtaccagaagcacatttccgagatgtctgctttagaggagcgattctcg
cgcttgtggacccaatgccaaaggtgtcagggctcacttcatgaagaggtgttgtgtact
agtcgagattgtccaattttctacatgcggaaaaaaatccaaattgatttgacagataag
gacaagatcttgcagcgcttcggcaaccctgaatggtga
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integrated database retrieval system
