Tigriopus californicus (tidepool copepod): 131883990
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Entry
131883990 CDS
T09700
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K06225
patched 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
DUF6930
Motif
Other DBs
NCBI-GeneID:
131883990
NCBI-ProteinID:
XP_059087594
LinkDB
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Position
1:15249619..15270864
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AA seq
1328 aa
AA seq
DB search
MVALQNKSALSTSVNMKDNSHISAQHGTLAMEKGSQTKSGTISDPDFLSRPAWYNARTAL
NVIRKGKATGNKPALWLRAKMQEELFSLGHFIQIHAGKVLFVGFLVLVVFCVGLKSARIE
SKIENLWVEEGGRLQKELQYVEAHLGLGAGATSEMIIQTPIEDSGTASILTSEAMLSHLD
VLQAATKVVVDHEDVSWKLRDLCYAQSIPLSEVQMIDQIMENLFPCSIITPLDCFWEGSK
LLDSDHPVHIPLGNEGSMPLSWKTLNPTNLLQDMKRFSNVFDFKSFEEYMKRAGITTGYQ
NKPCLNPFDPDCPETSPNKNSIQIPNIGAELTGGCYGFASRYNHWPEQLVVGGTSKNKTG
HITRAKGLQSVVQLMGEKDLFDFYSDTYKVHSLDWSREKAAEILADWQGKFSREVTRLTM
EKSLSKKYDINAYSNYQLDEIMEEFSEFSLVNLAIGLGLMALYASLTMMKWSDEVFSQSG
IGFCGVILVALSVASGLGLCGILDITFNATTSQIVPFLALGLGVDAMFLLAHTYGETVSK
RRNPAKENIIGDVLRKSGISVLLMAVCNIAAFLAAAVIPIPALRAFSLQAAILVAFNSVA
MTILFPAVLALDLRRIQADRVDVLCCYSGRKFREKRCLKEQKKAAKSAANNSSSLFDEQY
PGDEKCYVNSNEVASEPFQVTLTGFASLQFGPWLTKAPFKVLITAICLALTVLGVYGMTV
MEDGLTLSDVVPQNTSVYHFLNAQDKYFGFYNMYAVSQGNFEYPQNQKLLYDYHNAFVRI
PNIIKDDNGGLPEFWLSLFRNWLANLQTAFDDDFVDGKIDTKGWHKNASESGILAFKLMV
QTGHVDYPVDQTLVTRNRLVDSHGIINPSAFYNYLSAWFTNDAMAYSFAQGNIVPTPKLW
LHDSRDFDLKIPKSQPIAYAQIPFYMYDLGQTDVMVDTIRMVREVCQSFEERGLPNFPRG
IPFTFWEQYLHLRLWTVIALGAILGAMFLVTAFFLMNTWLAAILTVVVGLMVVQLLGFMG
VIGIKLSAIPAVILIIAAGMGLQFTLHLGIGFITSIGNKNRRILMAVEHVFAPVLHGAVS
TFLGITMLAFSHFDFIFRYFFLVLTAMIVLGVFNGLIFLPVFLAFLGPPGDVIPNESSEA
IAPPTPDVSHNNKKNGQRPRIHIKNNPQRPMPQPLSKRHNSDLSLSTIDEESQSYHTSSQ
SDQGGNPINIGGGTSVFLEPEVVVETTTIPNPQSSTSSRCSTPNQVTKVTATAKFKVEVH
APTNASTNERPQSSASSRRSRRSPKMNNDQNTPSSVHSSLTDSLRSSLSNSVASSLSSEA
GDPGFSEK
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggtggctttgcagaacaaatccgcgttgagcacgagtgtcaacatgaaggataattcg
cacatatcagcgcaacatgggacactggccatggagaagggctcccaaaccaaatccggg
accatttcagacccagattttctctccaggcctgcctggtacaacgctagaaccgcactc
aatgttatccgaaagggcaaagccactgggaacaaacctgctctttggttgagagccaag
atgcaagaggaactcttttcacttggacattttattcaaattcatgctgggaaagttctg
tttgtgggattcctcgtgttggtcgtgttttgtgtgggactcaagagtgcccgaatcgag
agcaagatcgagaatctctgggtggaagagggaggtcgtctacaaaaagaattgcaatat
gtggaagctcatttgggcctaggagcgggggccaccagtgagatgatcattcagacacca
attgaggacagtgggacagcctccatcctaacctcggaggccatgctgtcccatctagat
gtgttgcaagctgccaccaaggtcgtcgtcgaccatgaggatgtgtcgtggaaattgcgc
gatttgtgctacgcccagtccatccccttgtcagaggttcaaatgatcgatcagatcatg
gaaaaccttttcccctgctcaatcatcacccctttggattgcttttgggaaggatccaag
ctcttagactcggatcatcctgtccatattcctttgggcaatgagggaagcatgcctcta
tcgtggaagacccttaatccgaccaatttactccaagacatgaaacggttctccaatgtg
tttgacttcaagtcgtttgaggaatacatgaagagggctggaatcacgacgggctaccag
aataaaccctgtctcaacccttttgatccggattgcccggagacttcgcccaacaagaac
tcgattcaaatcccaaacattggagccgaattgacaggtggatgctatggttttgcatcg
agatacaaccattggcctgaacagttggtggtgggtggaacatccaagaacaagaccggt
cacatcaccagggccaaaggtctccaatcagtggttcaactaatgggtgaaaaggacctc
ttcgatttctacagtgacacgtacaaggtccacagtctggattggtcacgagagaaggcg
gccgagatcttggcggattggcaaggcaagttcagccgagaagtcaccagacttaccatg
gaaaagagtctcagcaagaaatatgacatcaacgcctactccaactaccagctggacgaa
atcatggaagagttctcagagttcagcttggtcaacttggccatcggcctcggcctcatg
gccctgtacgcctccttgaccatgatgaaatggtcggatgaggtgttctctcaatccggg
attggattttgtggcgtcatcttggtggctctcagtgtggccagcggtttgggcctttgc
gggatcctagatattaccttcaacgccaccacttcgcaaattgtgccctttctagccttg
ggcttgggggtcgatgccatgttcctgttggctcacacttacggcgagaccgtttccaag
cgaagaaacccagccaaagagaatatcataggcgacgtcttacggaaatccggcatctca
gtcctcctgatggctgtttgcaacattgccgcattcttagccgctgccgtcattcccatc
ccagctctgcgggcattctcgctgcaggcggccatattggtggcctttaattccgtggcc
atgacgatcctgttcccggctgttttagccttggatttgcgacggatccaagcggatcga
gttgacgttctttgttgctactctggaagaaaatttcgggaaaaacgatgcctgaaagag
cagaagaaggcggccaaatcagccgccaataattcatcgtcgctctttgacgaacagtat
cccggagatgagaaatgctacgtcaactccaacgaagtcgcttccgaaccgttccaggtc
acattgaccggctttgcgagtctgcaatttgggccttggttgaccaaagcacctttcaag
gttctcatcacagccatctgcttggcactgaccgtgttgggcgtttatggcatgaccgtg
atggaggatggcttaactttatcggatgtggttcctcaaaacacctctgtctatcacttc
ctgaacgctcaggacaaatattttggcttctacaacatgtacgcggtgagccagggtaat
ttcgaatatcctcagaaccagaagctcctttacgactaccacaatgccttcgttcggatc
ccaaatatcatcaaggacgacaatggaggattacccgagttctggttgtccctttttcgc
aattggttggccaacctccagactgccttcgacgacgattttgttgacggaaagatcgac
accaaaggatggcacaagaacgcctccgaatctggaatcttggcctttaaactaatggtt
cagactggccacgtggactacccagtggaccaaacacttgtgactcgaaaccgactggtt
gattcccatgggatcatcaaccccagtgccttctacaactacctctcagcctggtttacg
aatgatgccatggcctacagcttcgcccaagggaacattgtgcctacccccaagttgtgg
ctccatgattccagggatttcgacctcaagattcccaaatcccaacccattgcctatgcc
caaataccattttacatgtatgatttgggtcaaacggacgtcatggttgacaccatccga
atggtacgagaagtgtgccagagcttcgaagaacgaggattgcccaatttcccgcgggga
attccgttcactttctgggagcaatacctccatcttcgactttggacagtgattgcgctg
ggcgcaattttgggcgccatgttcttggtcacggcctttttcctcatgaacacgtggttg
gcagccattttgaccgttgtggtgggtttgatggtggttcagctcctgggcttcatgggc
gtgattggaatcaaactgagcgccatacccgctgtcatcctaattatcgctgccggaatg
ggccttcaattcactcttcacctcggcattggattcatcacttccattgggaacaagaac
agacggatcttgatggctgtggagcacgtctttgctcctgtcctacatggagcggtttcc
actttcctgggaatcaccatgctggccttttctcatttcgacttcatattccgatacttt
ttcttggtgctcacggctatgatcgtcctgggtgtgttcaatgggctcattttcttaccc
gtcttcctggcctttcttggccctcctggagacgtgatccccaacgagagctcagaagcc
atcgctccacccactccagatgttagtcataacaacaagaagaacggccaaagaccaaga
atacatatcaagaacaaccctcaacgaccgatgccccagccattgtccaagcgacacaac
tcagatttatccttgagcacgattgacgaggaatcgcagtcttatcacacgtcctcgcag
tcggatcaaggtggaaatccaatcaatattggaggcgggaccagcgtgttcttggaacct
gaggtcgtcgttgagaccacgaccattcccaatccacagagctccacgagtagtcgttgt
tcgactcccaatcaagtgaccaaggtcacggccacggccaagttcaaggtcgaggtccat
gcacccaccaatgctagtacaaatgagcgtccccagagttcagcatcctccaggcggtct
cgacgatcgcccaagatgaacaacgatcaaaacacgccttcgtccgtccatagcagcctt
acagactcgctgaggtccagtttaagcaatagcgtggcctcaagtctgagctcggaagcg
ggtgaccccggattttcggagaagtaa
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