Tigriopus californicus (tidepool copepod): 131883992
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Entry
131883992 CDS
T09700
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03030
DNA replication
tcf03410
Base excision repair
tcf03420
Nucleotide excision repair
tcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131883992
03410 Base excision repair
131883992
03420 Nucleotide excision repair
131883992
03430 Mismatch repair
131883992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcf03032
]
131883992
03036 Chromosome and associated proteins [BR:
tcf03036
]
131883992
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131883992
DNA replication proteins [BR:
tcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131883992
DNA Replication Termination Factors
ELG1-RFC complex
131883992
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
131883992
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131883992
Check point factors
HRAD17(Rad24)-RFC complex
131883992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
AAA_22
AAA_16
Rep_fac_C
DUF87
ATPgrasp_ST
Pdc1_Ge1
AAA_2
AAA_33
Motif
Other DBs
NCBI-GeneID:
131883992
NCBI-ProteinID:
XP_059087593
LinkDB
All DBs
Position
7:2811787..2814671
Genome browser
AA seq
413 aa
AA seq
DB search
MKTSLPECVSNLSEPTLSTFHVLLRSSFPARKKSREEFSSLFHFQSSDYFPTDHILRAKM
SLWVDKHRPKKLSKMDYHAELSDHLTRLVSSGDFPHLLIHGPSGAGKKTRVMALLRELYG
HGVDRLRIEHQGFETPSKKKIEILTIASNYHIEVNASDVGIYDRIVIQELIKTMASSQQL
NSEGQRDFKVVVLTEVDRLTKDAQHALRRTMEKYMATCRILLVTNSTSKVIPAIRSRCLN
IRIPAPSVNEVMRVLQTVAKKEGCNLPSELAQKISEKSQRNLRRAILLTEACKVQQYPFK
NDQDVMDLDWEVFLKDTAQQIVQEQSPKRLQEVRGRLYELLTHCIPPDVIFIGLHKELVK
NCDGELRTEVTHLASQYEHRLTQGNKSIYHLEAFVAKFMSIYMKFVEETMGDF
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatccctacccgagtgtgtctctaatctctcggaaccaaccctgtccactttt
catgtgttgttgcggtcctcatttcccgcccgaaaaaagtcccgagaggaattttcaagc
cttttccatttccaatcctccgattatttccccacggatcatatcttgagagccaaaatg
tcgttgtgggtggataagcatcgtcccaagaagctctccaagatggattatcacgcggag
ctgtcggatcacttgactcgcttggtgtcttcgggggatttcccgcacttgctcattcac
ggcccgagtggtgcgggcaagaagacccgtgtcatggccttactccgagaactgtacggg
catggggtggatcgcctgcggatcgaacatcagggatttgagacgccgtccaagaaaaag
atcgagatcctcaccatcgcctccaattatcatattgaggttaacgccagcgacgtggga
atctacgaccggatcgtgattcaagagctcattaagaccatggcctcgtctcaacaactc
aatagtgaaggtcagcgtgacttcaaagtggtagtcctgaccgaagttgatcgcctcacc
aaagacgctcaacacgccctgaggcggaccatggaaaaatatatggccacgtgccggatt
ctcctagtcaccaactccacgtccaaggtgattccggccatccgatctcgatgcctgaat
attcgaatcccagccccgtccgtgaacgaagtgatgcgtgtcctccaaactgtggccaag
aaagaaggctgcaatctcccgtcagaattggcgcagaaaatctcggaaaagtcccaacgc
aatctgagacgagctatcctgctcaccgaggcctgtaaggtacaacaatacccgtttaag
aacgatcaggatgttatggatttggattgggaagtctttctcaaggacacggctcaacaa
atcgtccaagaacagagtccgaagcgacttcaagaggttcgaggtcgattatacgagctt
ctaactcactgcattcccccggatgtgattttcattggcctccacaaggaactggtgaaa
aactgtgacggcgagcttcgaaccgaggtgacccatttggcgtcccaatacgagcaccga
ctgacccaaggcaacaagagcatttaccatttggaggcatttgtggccaagttcatgtcc
atctacatgaaattcgtcgaggagaccatgggcgacttttaa
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