Tigriopus californicus (tidepool copepod): 131884157
Help
Entry
131884157 CDS
T09700
Name
(RefSeq) spectrin beta chain-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131884157
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tcf04812
]
131884157
Cytoskeleton proteins [BR:
tcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
131884157
Intermediate filaments
Intermediate filament-binding proteins
131884157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
DUF2498
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
131884157
NCBI-ProteinID:
XP_059087814
LinkDB
All DBs
Position
7:complement(1250058..1266179)
Genome browser
AA seq
2544 aa
AA seq
DB search
MDSLKVKKGRRHRSKVRQFYSDFNSDESASPSISSNSEFQLSPEPASPSVFKFDQKLKAP
RVRHISLNEEDPTIAPLSPPYTGTPLPPLSAGLTSNQDIKDAALSIVYSKHIKNLMVERE
HVQKKTFTKWVNSHLCRINCRVVDLYTDLRDGKLLIKLLEILSGERLPRPTRGKMRIHCL
ENVDKALSFLYEQRVHLENMGAHDIVDGSPRLTLGLIWTIILRFQIQEITVEEPGPGAAT
RSAKDALLLWCQMKTAGYHNVNIRNFTTSWRDGLAFNAIIHKHRSDLIQYERLSKSNAMY
NLNNAFDVADREFNLVKLLDAEDVNVEMPDEKSIITYVVTYYHYFSKLKQETVQGKRIAK
VVGIDMECDKMIEQYEGFTSDLLKWIENVIEALGDRQFANSLRGVQEQLTQFNSYRNVEK
PPKFMEKGNLEVLLFTLQSKMRANNKVPYFPKEGKTISDINKAWERLEKAEHERELALRE
ELIRQEKLEQLAARFNRKAGMRETWLSENQRLVSQDNFGFDLAAVEAAAKKHEAIETDIF
AYEERVQAVIAVAHELETENYHDIECINARKDNVLRLWNYLLELLKARRTRLEMSLQLQH
NFQEMVYILDSMEELKMRLLSDDYGKHLLGVEDLLQKHSLVEADINVLGERVKQVVQHSQ
KFLADEDGADDYKPCDPSIIVERVQTLEDAYAELVRLAVERRSRLEESRQMWQFYWDMAE
EENWIKEMEQILSQGDIGHDLTTIHLLLSKHKSLETEIRAHENQLQMSIKQGQDLIDQGH
FGADKVQTRIDDVMSMWSQLVDLMDTRKRRLTEAVDFHQFLTDADDVDTYMLDVLRLVSS
DDIGKDESNVQTLLKKQKEIHDDLMNFQSNVDALHEQATTLGENDKPAVEKRLASIDKRY
NELQELSKLRKQRLLDALSLYKLFTEADGVEQWITEKEKMLDTMQPGKDIEDCEIMKHRF
DGFDREMNANASRVAVVNQLARQLLHVDHPNSDDIVARQNQLNQRWADLREQAEAKREQL
GSAHGVQTFHIECRETVTWIEDKKRVLEQTDELKMDLTGIMTLQRKLSGMDRDMAAIEAK
LKTLEDEANKIKDTHPDEAQVVFDRVEKLRGEWKQLNVMLHEREAKLEEAGDLHRFLKDL
DHFQAWLTKTESSIANEDTPSSLAEAEKLLSQHQQIREEIDSYTTDYTTMMDYGEKVTAD
PSTFEDPQYMFLRERLKALRDGWAEVHQMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQ
EHLLSKDETPSNLEQAESLIKKHEALLTTMEANDDKVNGVLQFAQRLCSEQHFASDKISK
KADDISERRNINHDLALQQLDKLRDQLLLHQFLQDCEELHDWIQEKNVLVQEDTYRSAKT
IHSKWTRHQAFESEIASNKERLDRVQESGQELLKTKPEMADLITPKLDELERDFEALQKN
TKDKGERIFDAKRADLYEQSCDDIDSFVMDLERQMETEPIGNDLTSVNILMQKQQMIETQ
MQVKSMQVSELETQAEKLVLMEPDKRNVIEAKKEEVSKKFEAVMAPLEARKKELLVKKEI
FQFLRDLEDENIWIEEKMNLVTSDEFGSSLQAVNLLIKKNKTLKGEIDNHEPRILSVCEI
GQKLIASDHPDSEKFQKDIDELLENLNNLKEMLEIRRQKLLVSEKAQQFFFDANEAEAWM
SEQELYMMVEDRGKDEFSAQNLMKKHTTLESAVEDYSENIRQLSESARQLIADEHPESEQ
ISIRLAQVEKLYAGLRDLAAERKAKLDDALKLFMLNREVDDLEQWIAEREVVAGSHELGQ
DYEHVTLLWERFREFAKDTEIIGTERVAAANQIADSLITSGHTDAATIAQWKDSLNDSWA
DLGELIETRTQMLEASRELHKYFHDCKDVLGRILEKQHSMPDDLGRDAGAVSSLTRKHQN
FVQDLQGLEGQVKAIQEESSKLQAAYAGEKAMEITNREREVVRAWLELNAMGDSRKNKLH
DTSDLFKFFNMVRNLMLWMDDLTRQMSTSEKPRDVSGVELLMNNHQGHKAEIDTREENFT
QCFTLGKELLSRGHYANNEIKEKLVELTNQRNTMLLRWEERWEHLQLILEVYQFARDAAV
AEAWLIAQDPYLKSGELGQTIDEVENLIKKHEAFEKAAAAQEERFAALERLTTFELKEIK
RRQEEDERRREEERAKHAPPSYDRPDAGERSDVGSVKSGTPTGVTRQGSRSKAAPTGATS
PPGGASGPTGRPPSGAGSVETGAIRRASAAKSPTPVTSPSETGGDISGKDDTSSNSSPLI
SSATLPPLPNKSAKRNSSSSGTTGLDSSLERPPKSTRPPTSPLKPPITFRSSSSRRGSTA
SEKKRGKTRTRSKSPFRSFRWPKSKSKAESEAAAAASYYSDDEDNLRRPLSERSDDEELE
STLIRKHEWESTTKKTSNRSWDKLCVVLKNGSIGFYKDQKAYKGAPSATYKGEPPVEISG
ATAEVASDYTKKKHVFRLKLNNGGMYLFQARDDDEMSQWVSAINQSAGGEGPSGGARSQT
LPTGASGGDGKKEKKPFFTLKGKN
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atggatagcttgaaggtcaaaaaaggccggagacatcgctcgaaagtgcgccaattctat
tctgatttcaactcggacgagtcagcctcgccttcaatttcgagcaattctgaattccaa
ctttcacccgaacccgcttctccgagcgttttcaaatttgaccagaagcttaaagcgcca
cgggttcgacatatcagtctcaacgaggaggatccaacgatagccccgttatcacctcct
tatacgggcacccctcttccccctttgagtgcgggcttgacatccaaccaagatatcaag
gatgccgcacttagtattgtgtactcaaaacacattaagaacctcatggttgagagagaa
catgttcagaagaagaccttcaccaaatgggtcaactcccatttgtgtcgcatcaactgc
cgggtggtcgacctgtacaccgaccttagagatggaaagctactcatcaaactcttggaa
attctttccggagaacgactgccgcgccccaccaggggtaaaatgcgcattcactgcctg
gagaatgtggacaaggccttgtcctttctctacgaacaaagagtccatttggagaacatg
ggagctcacgatatcgtggatgggagcccgcggctcactctcggtctcatctggaccatc
atcctccggttccagatccaagagatcacggttgaagagcccggaccaggggcagctaca
cgatccgccaaggacgctttgttgctctggtgtcagatgaagaccgccggataccacaat
gtgaatatccgcaacttcaccacgtcttggcgagatggcttggccttcaacgccatcatt
cataagcacagatcagatctcatccaatatgagcgtttgtccaagagcaacgccatgtat
aatttgaacaacgccttcgatgtggcggatcgtgagtttaatctggtcaaacttctggat
gccgaggatgtgaacgtggaaatgccagacgagaagtccatcatcacctacgtggtcacc
tactaccattatttctccaagttgaagcaggaaacggtccaaggcaaaaggattgccaaa
gtagtgggcatcgacatggagtgcgacaaaatgatcgaacaatacgaagggttcacgagt
gatctcctcaagtggattgagaacgtgatcgaggccttgggtgaccggcaatttgccaac
tctctccgtggagtccaagaacaactgacgcaattcaactcctatcgcaatgtggaaaag
ccccccaaattcatggaaaagggcaatctcgaagttcttctcttcacccttcaatccaag
atgagggccaacaataaagtgccttacttccccaaggaaggcaagaccatctcagacatc
aacaaggcctgggagcggttagagaaggccgaacacgaacgtgagttggccttgcgcgaa
gagctcatccgtcaagagaaactcgagcagctggccgcccgattcaaccgtaaagcgggc
atgcgagaaacttggctgagtgagaatcaacgtctggtctctcaagacaactttggcttc
gatttagccgctgttgaagctgccgccaagaaacacgaggccattgaaaccgacattttt
gcctacgaagaacgcgttcaagccgtgatcgcagtggcccatgagctggaaactgaaaac
tatcacgacatcgagtgcatcaatgctcggaaggacaatgtcctccgcttgtggaactac
ttgctcgagctcctgaaggcacgaagaacacgattggagatgtccttgcaattgcagcac
aacttccaggaaatggtgtacattttggattccatggaagaattgaagatgcgtttactc
tcagacgattacggaaagcatttgctcggggtcgaagatcttcttcagaaacactcgctt
gtggaggccgacatcaacgttctgggagaaagagtcaaacaagtcgtgcagcattcgcaa
aagttcttggccgacgaggatggagccgacgactacaagccctgcgatcccagtatcatc
gtggaacgagtccaaaccttggaagatgcctacgccgagctcgttcgtttggccgttgaa
cggcggtccagattggaagagtcccgacagatgtggcaattctattgggatatggccgag
gaggagaactggatcaaggagatggaacagattctctcccagggtgatattggacacgat
ctcaccaccattcatttattgctctccaagcacaagagtctggagactgaaatccgtgca
catgaaaaccaattgcagatgtccatcaagcaaggtcaagatctcatcgaccaaggacac
tttggtgcggacaaagtccagaccaggatcgatgacgttatgagcatgtggagccagctg
gtcgacctcatggacaccaggaaacgacgactcaccgaggccgttgacttccatcaattc
ctcactgacgccgatgatgtggacacgtacatgttggacgtgctccgattggtctcgtct
gatgacattggaaaagacgagtccaacgtgcagacattgctgaagaaacagaaggagatt
cacgacgatctcatgaacttccagtccaatgttgatgctcttcacgaacaagccacgact
ttgggcgagaacgacaagcccgcggttgagaagcgattggcctccatcgataagcgctac
aatgagctacaagagctttccaagcttcgcaaacagcgactcttggacgctctttccttg
tacaaattattcaccgaggccgatggtgtggaacaatggattaccgagaaagagaaaatg
ttggataccatgcaacccggcaaagatatcgaggactgtgagatcatgaagcacagattc
gatggattcgatcgcgaaatgaatgccaatgcgtcacgagttgctgttgtgaaccagttg
gctcgccaattactccatgttgaccaccctaactcggacgacatcgttgctcgacagaac
caactcaaccagagatgggccgacttgcgcgaacaagccgaggctaagcgtgaacaattg
ggatccgcgcatggcgtgcagaccttccatattgaatgtcgcgaaacagtcacttggatt
gaggacaagaagcgcgtcttggagcaaaccgacgagctcaagatggatctcaccggcatc
atgactctgcagcgaaagctctcgggaatggaccgagacatggcggctatcgaagccaag
ctcaaaacgctggaggatgaggccaacaaaatcaaggacactcatcctgacgaggctcaa
gtggtgtttgaccgtgtggagaaactccgtggcgaatggaaacaacttaatgttatgctc
catgagcgagaagccaagttggaagaggctggcgatcttcaccgctttctcaaggacttg
gatcatttccaggcttggctgaccaaaaccgagtcaagcatcgccaatgaggacacgccc
tcaagcttggctgaggctgagaaattgttgagtcaacatcaacagatccgagaggagatt
gatagctacacaactgactacactaccatgatggactacggcgagaaggtgactgccgac
ccgtccacattcgaagacccgcaatacatgttcctccgagagagactaaaggccttgaga
gatggatgggcggaggtccatcagatgtgggagaaccgacagcaattgttgtcacaatcc
ctcaacctccagatgttcaaccgggacgccaaacaggccgaagttcttctttcgcagcaa
gaacatctcctcagcaaggatgaaactccgagcaacttggagcaagccgaatcactcatc
aagaaacacgaggctctgctcactaccatggaggccaacgacgacaaggtcaatggcgtg
cttcaatttgcccagcgtttgtgctctgagcagcatttcgcttcagacaagatctctaaa
aaggccgacgacatctctgagaggagaaacatcaatcacgatcttgctctccaacaattg
gacaaactccgtgatcaacttcttcttcaccaatttcttcaagattgcgaagagttacac
gattggatccaagagaagaatgtcctcgttcaagaagacacctatcgatcggccaagacc
atccatagcaaatggaccaggcatcaagctttcgaatccgaaattgcttccaacaaggag
cgtctggatcgcgttcaagaaagtggccaagagcttctcaagaccaaaccagagatggct
gatctgatcacacccaaattggacgagctcgagagagatttcgaggccctccagaagaat
accaaagacaagggagagcggatcttcgacgccaagagagccgatctgtatgagcaatct
tgtgatgacattgatagcttcgtcatggaccttgaacggcagatggagaccgagcccatt
ggtaacgacctcacatccgtgaatatccttatgcagaaacaacaaatgatcgagactcag
atgcaagtcaagtccatgcaagtaagcgaattggaaacacaagccgaaaagttggtgctc
atggagcctgacaagagaaacgttattgaggccaagaaagaagaagtctcaaagaaattc
gaggccgtcatggccccactcgaggccaggaagaaggagctcttggtcaagaaagaaatc
ttccaatttttgcgcgacctcgaggatgagaacatttggattgaagagaagatgaacctt
gtgacgtcggatgagttcggtagcagtcttcaagctgttaaccttcttattaagaagaac
aagactctcaaaggtgagattgacaatcacgagcctcgaatcttatccgtgtgcgaaatt
ggacaaaagctcattgcctcggatcaccccgactccgagaaattccaaaaggacattgat
gagcttctcgagaacttgaacaatctcaaggagatgctcgaaatcagacggcaaaagctc
cttgtcagcgagaaggcccaacaattcttcttcgatgccaacgaggctgaagcctggatg
tctgaacaagagctctacatgatggttgaggacagaggcaaggacgaattctcagcgcaa
aacctcatgaagaaacacaccactcttgagagcgcagttgaggattactccgaaaatatt
cgccaattgagcgagtctgccagacaactcatcgccgatgagcatcctgaaagcgaacag
atttccattcgtctggcacaagtggagaaactctacgctggtttgcgagacttggccgcc
gaacggaaagccaaattagacgatgcgttgaagttgttcatgttgaaccgagaggtggac
gatttggagcaatggattgccgaacgcgaggtggtggctggatcacacgaattgggacaa
gactacgagcacgtcactttgctctgggagagattccgagaattcgccaaggacacggaa
atcattggtacggaacgagtggcagccgccaatcaaattgctgacagtctcatcacatcg
ggtcacacggatgcagccacaatcgcccaatggaaggactctctgaacgattcctgggct
gatcttggcgagttaatcgagacaaggactcaaatgcttgaagcctctcgtgagctccat
aaatacttccacgattgcaaggacgttttgggacgaatccttgagaagcaacactccatg
cctgatgacttgggccgcgatgctggagccgtgtcatcactcacccgcaaacatcagaat
ttcgtccaagatcttcaaggtctggagggtcaagtcaaggctatccaagaagagtcctcc
aaattgcaagctgcttatgctggggagaaggctatggaaatcactaaccgagagagagag
gtcgttcgggcttggcttgagctcaatgccatgggcgactcgcgcaagaataagttgcac
gatacctccgacttgttcaagttcttcaacatggtgcgcaacctcatgttgtggatggat
gatcttaccaggcagatgtctacatctgaaaaaccacgtgacgttagtggtgttgagctt
cttatgaacaaccatcaaggtcataaggccgaaattgacacacgcgaagagaactttact
caatgcttcacactgggcaaggagttactctctcgaggtcattacgcaaacaatgagatc
aaggaaaagttggtggagctcaccaaccagagaaataccatgttgctgaggtgggaggaa
cgttgggaacacctacaactgattctcgaagtataccagttcgcccgtgatgcggctgtg
gccgaggcctggctcatcgctcaagatccttacctgaagtccggagaattgggacaaacc
attgacgaagtcgagaatctgatcaagaagcacgaggcctttgaaaaggctgcggcggcg
caagaagagcgattcgctgcccttgagaggctcaccacgttcgagttgaaggaaatcaaa
cgccgtcaagaggaagacgagcggcgacgggaagaggaacgtgccaagcacgcccctcca
tcttacgaccgaccagatgccggggaacgatccgatgtgggaagtgtcaagtcaggaacc
ccaactggcgtcactcgccaaggatctcgttctaaagctgctcccacgggcgccacctcc
ccacctgggggagcttcgggcccgacgggacggcctcccagcggggcaggctcggttgaa
acgggcgcaatacggcgagcgtctgcggccaaatcgccgacgcccgtgacgtctccgagt
gaaactggcggagacatttctggcaaagatgacacttcttctaattcttcacccctaatt
tcttctgcgaccctgccgcctctgccaaataaatccgcgaagaggaactcatcatcctct
ggaaccactggactggattcatcactcgaacgacctcccaaatccacgaggccgcctaca
tctccgttgaaaccaccaatcacttttagatcgtcttcttcaaggcgtggcagtacagcg
agtgagaaaaaacgcggcaaaacgcgaacccgctccaagtcgccattccgcagcttccgc
tggccaaagtccaagtccaaagcagagtcagaggctgctgcggctgccagttactacagt
gatgatgaggataacctcagacgacccctgtctgaacgatccgatgatgaggaactcgag
agtaccttgataaggaaacacgaatgggaaagcactaccaagaaaacttccaacaggtcc
tgggacaaactttgcgtggtcttgaaaaacgggagcatcggcttttacaaggaccagaag
gcctacaagggtgcaccaagtgccacttacaaaggggaacccccagtggaaatttcaggg
gctaccgccgaagtggccagtgattacacaaagaagaagcacgtcttcagattgaagttg
aacaatggaggcatgtacctcttccaagcccgagatgacgatgagatgagccaatgggtg
agcgcaatcaaccagtcagctggaggggagggaccttcaggtggagcgcgatcccaaact
ctgcctactggcgcctctggcggtgatggcaagaaagagaagaaacccttcttcactctg
aaaggaaaaaattaa
DBGET
integrated database retrieval system
