Tigriopus californicus (tidepool copepod): 131884157
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Entry
131884157 CDS
T09700
Name
(RefSeq) spectrin beta chain-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04517
IgSF CAM signaling
tcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
131884157
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131884157
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tcf04812
]
131884157
Cytoskeleton proteins [BR:
tcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
131884157
Intermediate filaments
Intermediate filament-binding proteins
131884157
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
DUF2498
PH_11
Motif
Other DBs
NCBI-GeneID:
131884157
NCBI-ProteinID:
XP_059087814
LinkDB
All DBs
Position
7:complement(1250058..1266179)
Genome browser
AA seq
2544 aa
AA seq
DB search
MDSLKVKKGRRHRSKVRQFYSDFNSDESASPSISSNSEFQLSPEPASPSVFKFDQKLKAP
RVRHISLNEEDPTIAPLSPPYTGTPLPPLSAGLTSNQDIKDAALSIVYSKHIKNLMVERE
HVQKKTFTKWVNSHLCRINCRVVDLYTDLRDGKLLIKLLEILSGERLPRPTRGKMRIHCL
ENVDKALSFLYEQRVHLENMGAHDIVDGSPRLTLGLIWTIILRFQIQEITVEEPGPGAAT
RSAKDALLLWCQMKTAGYHNVNIRNFTTSWRDGLAFNAIIHKHRSDLIQYERLSKSNAMY
NLNNAFDVADREFNLVKLLDAEDVNVEMPDEKSIITYVVTYYHYFSKLKQETVQGKRIAK
VVGIDMECDKMIEQYEGFTSDLLKWIENVIEALGDRQFANSLRGVQEQLTQFNSYRNVEK
PPKFMEKGNLEVLLFTLQSKMRANNKVPYFPKEGKTISDINKAWERLEKAEHERELALRE
ELIRQEKLEQLAARFNRKAGMRETWLSENQRLVSQDNFGFDLAAVEAAAKKHEAIETDIF
AYEERVQAVIAVAHELETENYHDIECINARKDNVLRLWNYLLELLKARRTRLEMSLQLQH
NFQEMVYILDSMEELKMRLLSDDYGKHLLGVEDLLQKHSLVEADINVLGERVKQVVQHSQ
KFLADEDGADDYKPCDPSIIVERVQTLEDAYAELVRLAVERRSRLEESRQMWQFYWDMAE
EENWIKEMEQILSQGDIGHDLTTIHLLLSKHKSLETEIRAHENQLQMSIKQGQDLIDQGH
FGADKVQTRIDDVMSMWSQLVDLMDTRKRRLTEAVDFHQFLTDADDVDTYMLDVLRLVSS
DDIGKDESNVQTLLKKQKEIHDDLMNFQSNVDALHEQATTLGENDKPAVEKRLASIDKRY
NELQELSKLRKQRLLDALSLYKLFTEADGVEQWITEKEKMLDTMQPGKDIEDCEIMKHRF
DGFDREMNANASRVAVVNQLARQLLHVDHPNSDDIVARQNQLNQRWADLREQAEAKREQL
GSAHGVQTFHIECRETVTWIEDKKRVLEQTDELKMDLTGIMTLQRKLSGMDRDMAAIEAK
LKTLEDEANKIKDTHPDEAQVVFDRVEKLRGEWKQLNVMLHEREAKLEEAGDLHRFLKDL
DHFQAWLTKTESSIANEDTPSSLAEAEKLLSQHQQIREEIDSYTTDYTTMMDYGEKVTAD
PSTFEDPQYMFLRERLKALRDGWAEVHQMWENRQQLLSQSLNLQMFNRDAKQAEVLLSQQ
EHLLSKDETPSNLEQAESLIKKHEALLTTMEANDDKVNGVLQFAQRLCSEQHFASDKISK
KADDISERRNINHDLALQQLDKLRDQLLLHQFLQDCEELHDWIQEKNVLVQEDTYRSAKT
IHSKWTRHQAFESEIASNKERLDRVQESGQELLKTKPEMADLITPKLDELERDFEALQKN
TKDKGERIFDAKRADLYEQSCDDIDSFVMDLERQMETEPIGNDLTSVNILMQKQQMIETQ
MQVKSMQVSELETQAEKLVLMEPDKRNVIEAKKEEVSKKFEAVMAPLEARKKELLVKKEI
FQFLRDLEDENIWIEEKMNLVTSDEFGSSLQAVNLLIKKNKTLKGEIDNHEPRILSVCEI
GQKLIASDHPDSEKFQKDIDELLENLNNLKEMLEIRRQKLLVSEKAQQFFFDANEAEAWM
SEQELYMMVEDRGKDEFSAQNLMKKHTTLESAVEDYSENIRQLSESARQLIADEHPESEQ
ISIRLAQVEKLYAGLRDLAAERKAKLDDALKLFMLNREVDDLEQWIAEREVVAGSHELGQ
DYEHVTLLWERFREFAKDTEIIGTERVAAANQIADSLITSGHTDAATIAQWKDSLNDSWA
DLGELIETRTQMLEASRELHKYFHDCKDVLGRILEKQHSMPDDLGRDAGAVSSLTRKHQN
FVQDLQGLEGQVKAIQEESSKLQAAYAGEKAMEITNREREVVRAWLELNAMGDSRKNKLH
DTSDLFKFFNMVRNLMLWMDDLTRQMSTSEKPRDVSGVELLMNNHQGHKAEIDTREENFT
QCFTLGKELLSRGHYANNEIKEKLVELTNQRNTMLLRWEERWEHLQLILEVYQFARDAAV
AEAWLIAQDPYLKSGELGQTIDEVENLIKKHEAFEKAAAAQEERFAALERLTTFELKEIK
RRQEEDERRREEERAKHAPPSYDRPDAGERSDVGSVKSGTPTGVTRQGSRSKAAPTGATS
PPGGASGPTGRPPSGAGSVETGAIRRASAAKSPTPVTSPSETGGDISGKDDTSSNSSPLI
SSATLPPLPNKSAKRNSSSSGTTGLDSSLERPPKSTRPPTSPLKPPITFRSSSSRRGSTA
SEKKRGKTRTRSKSPFRSFRWPKSKSKAESEAAAAASYYSDDEDNLRRPLSERSDDEELE
STLIRKHEWESTTKKTSNRSWDKLCVVLKNGSIGFYKDQKAYKGAPSATYKGEPPVEISG
ATAEVASDYTKKKHVFRLKLNNGGMYLFQARDDDEMSQWVSAINQSAGGEGPSGGARSQT
LPTGASGGDGKKEKKPFFTLKGKN
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atggatagcttgaaggtcaaaaaaggccggagacatcgctcgaaagtgcgccaattctat
tctgatttcaactcggacgagtcagcctcgccttcaatttcgagcaattctgaattccaa
ctttcacccgaacccgcttctccgagcgttttcaaatttgaccagaagcttaaagcgcca
cgggttcgacatatcagtctcaacgaggaggatccaacgatagccccgttatcacctcct
tatacgggcacccctcttccccctttgagtgcgggcttgacatccaaccaagatatcaag
gatgccgcacttagtattgtgtactcaaaacacattaagaacctcatggttgagagagaa
catgttcagaagaagaccttcaccaaatgggtcaactcccatttgtgtcgcatcaactgc
cgggtggtcgacctgtacaccgaccttagagatggaaagctactcatcaaactcttggaa
attctttccggagaacgactgccgcgccccaccaggggtaaaatgcgcattcactgcctg
gagaatgtggacaaggccttgtcctttctctacgaacaaagagtccatttggagaacatg
ggagctcacgatatcgtggatgggagcccgcggctcactctcggtctcatctggaccatc
atcctccggttccagatccaagagatcacggttgaagagcccggaccaggggcagctaca
cgatccgccaaggacgctttgttgctctggtgtcagatgaagaccgccggataccacaat
gtgaatatccgcaacttcaccacgtcttggcgagatggcttggccttcaacgccatcatt
cataagcacagatcagatctcatccaatatgagcgtttgtccaagagcaacgccatgtat
aatttgaacaacgccttcgatgtggcggatcgtgagtttaatctggtcaaacttctggat
gccgaggatgtgaacgtggaaatgccagacgagaagtccatcatcacctacgtggtcacc
tactaccattatttctccaagttgaagcaggaaacggtccaaggcaaaaggattgccaaa
gtagtgggcatcgacatggagtgcgacaaaatgatcgaacaatacgaagggttcacgagt
gatctcctcaagtggattgagaacgtgatcgaggccttgggtgaccggcaatttgccaac
tctctccgtggagtccaagaacaactgacgcaattcaactcctatcgcaatgtggaaaag
ccccccaaattcatggaaaagggcaatctcgaagttcttctcttcacccttcaatccaag
atgagggccaacaataaagtgccttacttccccaaggaaggcaagaccatctcagacatc
aacaaggcctgggagcggttagagaaggccgaacacgaacgtgagttggccttgcgcgaa
gagctcatccgtcaagagaaactcgagcagctggccgcccgattcaaccgtaaagcgggc
atgcgagaaacttggctgagtgagaatcaacgtctggtctctcaagacaactttggcttc
gatttagccgctgttgaagctgccgccaagaaacacgaggccattgaaaccgacattttt
gcctacgaagaacgcgttcaagccgtgatcgcagtggcccatgagctggaaactgaaaac
tatcacgacatcgagtgcatcaatgctcggaaggacaatgtcctccgcttgtggaactac
ttgctcgagctcctgaaggcacgaagaacacgattggagatgtccttgcaattgcagcac
aacttccaggaaatggtgtacattttggattccatggaagaattgaagatgcgtttactc
tcagacgattacggaaagcatttgctcggggtcgaagatcttcttcagaaacactcgctt
gtggaggccgacatcaacgttctgggagaaagagtcaaacaagtcgtgcagcattcgcaa
aagttcttggccgacgaggatggagccgacgactacaagccctgcgatcccagtatcatc
gtggaacgagtccaaaccttggaagatgcctacgccgagctcgttcgtttggccgttgaa
cggcggtccagattggaagagtcccgacagatgtggcaattctattgggatatggccgag
gaggagaactggatcaaggagatggaacagattctctcccagggtgatattggacacgat
ctcaccaccattcatttattgctctccaagcacaagagtctggagactgaaatccgtgca
catgaaaaccaattgcagatgtccatcaagcaaggtcaagatctcatcgaccaaggacac
tttggtgcggacaaagtccagaccaggatcgatgacgttatgagcatgtggagccagctg
gtcgacctcatggacaccaggaaacgacgactcaccgaggccgttgacttccatcaattc
ctcactgacgccgatgatgtggacacgtacatgttggacgtgctccgattggtctcgtct
gatgacattggaaaagacgagtccaacgtgcagacattgctgaagaaacagaaggagatt
cacgacgatctcatgaacttccagtccaatgttgatgctcttcacgaacaagccacgact
ttgggcgagaacgacaagcccgcggttgagaagcgattggcctccatcgataagcgctac
aatgagctacaagagctttccaagcttcgcaaacagcgactcttggacgctctttccttg
tacaaattattcaccgaggccgatggtgtggaacaatggattaccgagaaagagaaaatg
ttggataccatgcaacccggcaaagatatcgaggactgtgagatcatgaagcacagattc
gatggattcgatcgcgaaatgaatgccaatgcgtcacgagttgctgttgtgaaccagttg
gctcgccaattactccatgttgaccaccctaactcggacgacatcgttgctcgacagaac
caactcaaccagagatgggccgacttgcgcgaacaagccgaggctaagcgtgaacaattg
ggatccgcgcatggcgtgcagaccttccatattgaatgtcgcgaaacagtcacttggatt
gaggacaagaagcgcgtcttggagcaaaccgacgagctcaagatggatctcaccggcatc
atgactctgcagcgaaagctctcgggaatggaccgagacatggcggctatcgaagccaag
ctcaaaacgctggaggatgaggccaacaaaatcaaggacactcatcctgacgaggctcaa
gtggtgtttgaccgtgtggagaaactccgtggcgaatggaaacaacttaatgttatgctc
catgagcgagaagccaagttggaagaggctggcgatcttcaccgctttctcaaggacttg
gatcatttccaggcttggctgaccaaaaccgagtcaagcatcgccaatgaggacacgccc
tcaagcttggctgaggctgagaaattgttgagtcaacatcaacagatccgagaggagatt
gatagctacacaactgactacactaccatgatggactacggcgagaaggtgactgccgac
ccgtccacattcgaagacccgcaatacatgttcctccgagagagactaaaggccttgaga
gatggatgggcggaggtccatcagatgtgggagaaccgacagcaattgttgtcacaatcc
ctcaacctccagatgttcaaccgggacgccaaacaggccgaagttcttctttcgcagcaa
gaacatctcctcagcaaggatgaaactccgagcaacttggagcaagccgaatcactcatc
aagaaacacgaggctctgctcactaccatggaggccaacgacgacaaggtcaatggcgtg
cttcaatttgcccagcgtttgtgctctgagcagcatttcgcttcagacaagatctctaaa
aaggccgacgacatctctgagaggagaaacatcaatcacgatcttgctctccaacaattg
gacaaactccgtgatcaacttcttcttcaccaatttcttcaagattgcgaagagttacac
gattggatccaagagaagaatgtcctcgttcaagaagacacctatcgatcggccaagacc
atccatagcaaatggaccaggcatcaagctttcgaatccgaaattgcttccaacaaggag
cgtctggatcgcgttcaagaaagtggccaagagcttctcaagaccaaaccagagatggct
gatctgatcacacccaaattggacgagctcgagagagatttcgaggccctccagaagaat
accaaagacaagggagagcggatcttcgacgccaagagagccgatctgtatgagcaatct
tgtgatgacattgatagcttcgtcatggaccttgaacggcagatggagaccgagcccatt
ggtaacgacctcacatccgtgaatatccttatgcagaaacaacaaatgatcgagactcag
atgcaagtcaagtccatgcaagtaagcgaattggaaacacaagccgaaaagttggtgctc
atggagcctgacaagagaaacgttattgaggccaagaaagaagaagtctcaaagaaattc
gaggccgtcatggccccactcgaggccaggaagaaggagctcttggtcaagaaagaaatc
ttccaatttttgcgcgacctcgaggatgagaacatttggattgaagagaagatgaacctt
gtgacgtcggatgagttcggtagcagtcttcaagctgttaaccttcttattaagaagaac
aagactctcaaaggtgagattgacaatcacgagcctcgaatcttatccgtgtgcgaaatt
ggacaaaagctcattgcctcggatcaccccgactccgagaaattccaaaaggacattgat
gagcttctcgagaacttgaacaatctcaaggagatgctcgaaatcagacggcaaaagctc
cttgtcagcgagaaggcccaacaattcttcttcgatgccaacgaggctgaagcctggatg
tctgaacaagagctctacatgatggttgaggacagaggcaaggacgaattctcagcgcaa
aacctcatgaagaaacacaccactcttgagagcgcagttgaggattactccgaaaatatt
cgccaattgagcgagtctgccagacaactcatcgccgatgagcatcctgaaagcgaacag
atttccattcgtctggcacaagtggagaaactctacgctggtttgcgagacttggccgcc
gaacggaaagccaaattagacgatgcgttgaagttgttcatgttgaaccgagaggtggac
gatttggagcaatggattgccgaacgcgaggtggtggctggatcacacgaattgggacaa
gactacgagcacgtcactttgctctgggagagattccgagaattcgccaaggacacggaa
atcattggtacggaacgagtggcagccgccaatcaaattgctgacagtctcatcacatcg
ggtcacacggatgcagccacaatcgcccaatggaaggactctctgaacgattcctgggct
gatcttggcgagttaatcgagacaaggactcaaatgcttgaagcctctcgtgagctccat
aaatacttccacgattgcaaggacgttttgggacgaatccttgagaagcaacactccatg
cctgatgacttgggccgcgatgctggagccgtgtcatcactcacccgcaaacatcagaat
ttcgtccaagatcttcaaggtctggagggtcaagtcaaggctatccaagaagagtcctcc
aaattgcaagctgcttatgctggggagaaggctatggaaatcactaaccgagagagagag
gtcgttcgggcttggcttgagctcaatgccatgggcgactcgcgcaagaataagttgcac
gatacctccgacttgttcaagttcttcaacatggtgcgcaacctcatgttgtggatggat
gatcttaccaggcagatgtctacatctgaaaaaccacgtgacgttagtggtgttgagctt
cttatgaacaaccatcaaggtcataaggccgaaattgacacacgcgaagagaactttact
caatgcttcacactgggcaaggagttactctctcgaggtcattacgcaaacaatgagatc
aaggaaaagttggtggagctcaccaaccagagaaataccatgttgctgaggtgggaggaa
cgttgggaacacctacaactgattctcgaagtataccagttcgcccgtgatgcggctgtg
gccgaggcctggctcatcgctcaagatccttacctgaagtccggagaattgggacaaacc
attgacgaagtcgagaatctgatcaagaagcacgaggcctttgaaaaggctgcggcggcg
caagaagagcgattcgctgcccttgagaggctcaccacgttcgagttgaaggaaatcaaa
cgccgtcaagaggaagacgagcggcgacgggaagaggaacgtgccaagcacgcccctcca
tcttacgaccgaccagatgccggggaacgatccgatgtgggaagtgtcaagtcaggaacc
ccaactggcgtcactcgccaaggatctcgttctaaagctgctcccacgggcgccacctcc
ccacctgggggagcttcgggcccgacgggacggcctcccagcggggcaggctcggttgaa
acgggcgcaatacggcgagcgtctgcggccaaatcgccgacgcccgtgacgtctccgagt
gaaactggcggagacatttctggcaaagatgacacttcttctaattcttcacccctaatt
tcttctgcgaccctgccgcctctgccaaataaatccgcgaagaggaactcatcatcctct
ggaaccactggactggattcatcactcgaacgacctcccaaatccacgaggccgcctaca
tctccgttgaaaccaccaatcacttttagatcgtcttcttcaaggcgtggcagtacagcg
agtgagaaaaaacgcggcaaaacgcgaacccgctccaagtcgccattccgcagcttccgc
tggccaaagtccaagtccaaagcagagtcagaggctgctgcggctgccagttactacagt
gatgatgaggataacctcagacgacccctgtctgaacgatccgatgatgaggaactcgag
agtaccttgataaggaaacacgaatgggaaagcactaccaagaaaacttccaacaggtcc
tgggacaaactttgcgtggtcttgaaaaacgggagcatcggcttttacaaggaccagaag
gcctacaagggtgcaccaagtgccacttacaaaggggaacccccagtggaaatttcaggg
gctaccgccgaagtggccagtgattacacaaagaagaagcacgtcttcagattgaagttg
aacaatggaggcatgtacctcttccaagcccgagatgacgatgagatgagccaatgggtg
agcgcaatcaaccagtcagctggaggggagggaccttcaggtggagcgcgatcccaaact
ctgcctactggcgcctctggcggtgatggcaagaaagagaagaaacccttcttcactctg
aaaggaaaaaattaa
DBGET
integrated database retrieval system
