Tigriopus californicus (tidepool copepod): 131884447
Help
Entry
131884447 CDS
T09700
Name
(RefSeq) histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tcf01009
]
131884447
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131884447
04131 Membrane trafficking [BR:
tcf04131
]
131884447
03036 Chromosome and associated proteins [BR:
tcf03036
]
131884447
Enzymes [BR:
tcf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
131884447
Protein phosphatases and associated proteins [BR:
tcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131884447
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
131884447
Membrane trafficking [BR:
tcf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
131884447
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
131884447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
131884447
NCBI-ProteinID:
XP_059088212
LinkDB
All DBs
Position
8:13883094..13886806
Genome browser
AA seq
1015 aa
AA seq
DB search
MSASSPQSSKGSPSRLQALKAAKKAALKAGGGSPHGSPSSEIVRDPFEKALEAKSVIHGN
TGLMVDGAMRLHRNPWDAEHIESPERLAVVEARIREWGLWDRCIMSPARLATPAEIERVH
TAQHWAQLEALGQQSVESIRQTCQQQFQTIYMNEDSMRAARLAAGGFIDLVQAISQGRWQ
NGMALVRPPGHHAMKAEANGFCLLNTVAIAAQDALHRDPHKKILIVDFDVHHGQGTQQLF
YEDPRVLFMSMHRYESGEFCPHLRESQFDYIGQLAGQGFNVNIPLNEKHLHDVDYLNIFH
QIVLPLAYEFEPSLVLVSAGFDAALGCPEGEMCLTPPVFGHMVQSLMSLAYGNVAVLLEG
GYFLESLADGAAFALKALLGDDPVRLGPMDPLNESVFESILNVISAHRDHWTMFPVQEEY
NISDYDPSTSEDCHEPLILYRGDSYLEARALNMGKTEPEDCYAKHTPEKHAELMAQLTEI
RKTYPNETLTSGGMDIKRVALTFDELMTRHSNLEEPNHPERPGRVLNIYKSHDKFGLLDR
SNLTHLPSRRATAEEIFLCHDAAHYEAMSQIPEKTQDELESLAGSFDSIYMNPDTFDCAL
LSCGNLLNVVDAVMDGRAKKGVAIIRPPGHHAESDEPCGFCLFNNVAIAAKYAIEYQQAK
RVLILDWDVHHGNGIQNMFYDNPNVLYISLHRFDNGTFFPSRMDANYDYCGENQGEGFNI
NIPWNGAGMGDPEYSLALFNIILPVGYEFNPDLVLISAGFDAAQGDPLGKCCVTPEMYGH
FVHHLQRLAQGRVIVALEGGYNLNSIALSMTMCTKALLGDPLPPVSILKRPKTSAVESIR
NVMRTHARYWDSLKFGLKKVPDSFEELKVQAYSSPTKKVTQQIPIDMSKSPHGAKFESLY
IPSEYGHFSDCHTVNTISSSAHSSDGIQLVDSKRRPDGGDSLASNFLTTSLGNLQLDNST
SEATRTSPSRTDYYPFQFGNNNYSSPSVNTITKTVRTNSSCAVVDTTKKTDEPSS
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcctcctcgcctcagtcgtctaagggtagtccgtcccgccttcaagccttgaag
gcggccaagaaggcggctctcaaggccggcggcggctcgccccatggctcgccctcgtct
gaaatcgtacgagaccccttcgagaaggccctggaggccaaaagcgtcatccacggcaac
acgggcctcatggtggacggagccatgcggctgcatcggaatccgtgggatgccgaacat
atcgaaagtcccgagcgattggccgtagtggaagcccgcatccgggaatggggtctgtgg
gatcgatgcatcatgagcccggctcggctagctactccggctgagattgaacgtgtccat
acggcccaacattgggcccaattggaggccttgggccaacaatccgtggaatcaatccga
caaacgtgtcaacagcagtttcagaccatttacatgaatgaagactcgatgcgggcggcg
cgattggcggcggggggtttcatcgacttggttcaggccattagtcaaggtcggtggcag
aacggcatggccttggtccggccgcccggacatcacgccatgaaggccgaggccaatggg
ttctgtttgctgaacaccgtagccatcgctgctcaagatgccctccatcgggatccgcac
aagaagatcctcattgtggatttcgacgtccaccatggtcaaggcacccaacaactgttt
tacgaggacccgcgtgtgcttttcatgtccatgcaccgatatgagtccggcgagttctgc
ccgcatctccgcgagtcccaattcgattacatcggtcaacttgcgggccaaggcttcaac
gtcaacattcctctcaacgagaagcatttgcacgacgtggactacttgaacatctttcac
cagattgtgctcccgttggcctacgaattcgaaccctcgttggtgttggtctcggccggg
tttgatgcggccttgggttgtcccgagggtgaaatgtgtctcacgccgccagtatttggt
cacatggtccaatcgttgatgagcctggcctatggcaatgtggctgtgttactggaaggc
ggctatttcttggagtccttggccgatggagcggcgtttgccctcaaggcgctcttgggt
gatgatcccgttcggttaggccccatggacccgctcaacgaatccgtgttcgagagcatc
ttgaatgtcatctcggctcatcgcgatcattggaccatgtttccggtccaagaggagtac
aatatatccgactacgaccctagcacaagtgaggattgtcacgaaccgctcattttgtac
cgtggggactcttaccttgaagctcgagccctgaacatgggcaaaaccgagcccgaggat
tgctatgccaaacacacgcccgagaagcatgccgagctcatggcacaattgactgagatt
cgaaaaacttatcctaacgagacattaacttccggcggcatggacatcaaacgcgtggcg
ctgacctttgatgagctgatgacccgacattccaacttggaagagcccaatcatccggaa
cgccctggtcgggtgttgaacatctacaaatcccacgacaagttcggtctgctggaccgg
agcaatctcacgcatttgccatcgcgacgcgccacagccgaagagatcttcctgtgtcac
gatgcggctcactacgaggccatgtctcagatcccggagaaaactcaggacgaattggaa
agtctggcgggttcctttgactcgatttacatgaatccagacacattcgattgcgccctc
ttgtcttgcgggaacttgttgaacgttgtggatgccgtgatggatgggcgggccaagaaa
ggagtggccattattagaccgcctgggcatcacgccgagagcgacgagccttgtgggttc
tgcttgttcaacaatgtagccattgccgccaaatacgccatcgagtatcagcaggccaag
agagtgctcatcttggactgggatgttcatcacggcaacggaattcagaatatgttctac
gacaatcccaatgtgttgtacatctcgctccatcggttcgacaacggcacgttcttcccg
agtcgaatggatgccaactacgactattgcggcgagaatcaaggcgaaggcttcaacatc
aacatcccgtggaatggggcgggcatgggcgatcccgaatacagtctggccctcttcaat
atcatcctgcccgtgggctacgagttcaatccggacttagtgttgatctcggccggattc
gatgccgctcaaggtgatccgctcgggaaatgttgcgtcacgcccgaaatgtacggtcac
tttgtgcatcacctccagagattggcccaaggcagagtcattgtggccctggaaggagga
tataatctcaattccatcgccttgagcatgaccatgtgtaccaaggccctcctgggcgac
cccttgcctccggtgtctatcctcaagcgacccaagacctcggctgtggagagtatccgg
aatgtgatgcgaacccatgctcgatactgggattctctcaagtttggcttgaagaaggtg
cccgattcttttgaggaactcaaggttcaggcctactcgagcccaacgaagaaggtcaca
caacaaattcctattgacatgtccaagtccccacatggagccaagttcgagtctttgtac
atcccatctgaatacggacacttcagcgattgtcacactgtcaacaccatctcgagctcg
gctcattccagcgatggaatccaattggtggactccaaaagacgccctgatggaggcgat
agcttggcctctaactttctaaccaccagcttggggaacctgcaattggacaattccacc
tcggaagcgacccgaacctcgccctcgagaacggactactatccattccaatttggaaac
aacaactattccagtccttctgtgaataccatcaccaagaccgtgcgtactaacagttcg
tgcgcggttgtggatactacaaagaaaacggatgagccctcgtcataa
DBGET
integrated database retrieval system
