Tigriopus californicus (tidepool copepod): 131884632
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Entry
131884632 CDS
T09700
Name
(RefSeq) circadian locomoter output cycles protein kaput-like
KO
K09026
neuronal PAS domain-containing protein 2
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcf03000
]
131884632
Transcription factors [BR:
tcf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
131884632
BRITE hierarchy
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GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HLH
bHLH_IRO3
PAS_9
PAS_4
Med26
Motif
Other DBs
NCBI-GeneID:
131884632
NCBI-ProteinID:
XP_059088452
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All DBs
Position
8:14662020..14665367
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AA seq
654 aa
AA seq
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MMMDDYDEKDDTKRKSRNLSEKKRRDQFNILVTELGSMVSPNNRKMDKTTVLKSTINFLR
QHNESSVKSQVHEIHEDWKPSFLSNEEFTHLMLEALEGFILVFSTDGAIVYASESMTSLV
GFLPRDIMQRSIFEIIHERDKIMLYNTLNSPNDLDQETEVNFYLHFKRLDIRHADENKGY
ELVKLTGYFRKWTINEPLNDGNGSDDDNISLQSGYSRLSTQDGTITARKTVFVSTARAQT
TQLLREMPLTHFAKSEFISRYSLEWKFLFLDHRAPPIIGYLPFELLGTSGYDYYHMDDLE
RISLCHEALMQTGEGTSCMHRFLSKGQHWVWLQTRYFISYHQWNSKPEFVVATHRVISYL
DVIKEFKNETDEKESELGSLDIRSRYPTTESPTWSSKSSMCGSSGTGASSSKFSQEHKQS
YSDNNLSDGAHPVGSFDSIGRSPGAMPGGRPLKNLDRGESIPTMGDRNGESKMTNESRQP
VMQIATPTPQSSNGFSGPTTVLVPAPMAAMPNPHIAMASRPHIVMTPAQLQLQEQLRAKH
NELSRRIVEQQEELRRVSEQLVMSQYGLVPVTVTFQQQPTSIGSNPSLSGLVSTPQGTDM
SPYMPPITSRSDITLHGATSISSGHPSRETGLRSHVFYTSVTSNDFNSDARDKL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggacgactatgacgagaaagacgataccaagcggaagtctcgaaatctgagc
gaaaaaaagcgaagggatcagttcaacatattggttaccgagctgggctccatggtgtct
cccaacaaccgcaagatggacaagacgaccgtcctcaagtccaccatcaacttcctccga
cagcacaatgagagctctgtcaaatcgcaggtccatgagatccatgaggactggaagccg
tccttcctctctaatgaggaatttacccacttgatgttggaagctttggaaggtttcatt
ttagtgttcagtacggatggtgctatcgtgtatgcctccgagagcatgacctccttggtg
gggttcctcccaagagacataatgcagcgttccatttttgaaatcattcacgagcgggac
aagatcatgttgtacaacaccctcaacagcccgaacgacctagaccaagagacagaggtc
aatttttacttgcacttcaaacggttggacattcgacacgcagacgagaacaaagggtat
gagttggtcaaattgacgggatactttcgtaaatggaccatcaatgagccgctgaacgac
ggcaatgggtccgacgatgacaacatatcacttcaatcgggttattctcgtttgagtacc
caagatggaaccataaccgcccggaagactgttttcgtgtccaccgcccgtgctcaaacc
acacaacttctaagagaaatgcccctcactcattttgccaaaagcgagttcatctcgaga
tattctttggaatggaagtttctctttctggaccaccgtgccccgcccatcatcgggtat
ttgccctttgagctcctaggaacgtccggttatgactactatcatatggatgacctggag
cgaatatctctgtgtcacgaagccctcatgcaaactggcgaaggtactagttgtatgcat
cgtttcctttccaagggccagcattgggtgtggcttcagacgcgttatttcatttcgtac
catcaatggaactcaaagccagaatttgtggtggccactcatcgagtaattagctatttg
gacgtaatcaaggaattcaaaaacgaaaccgatgagaaagaatcagagttggggtcgctt
gacatacggtccagatacccaaccaccgagtccccgacatggtcctcgaaaagttcgatg
tgcggaagttccggcaccggtgcgagttcgtctaaattcagtcaggaacacaaacagagt
tatagtgataacaacctaagtgatggtgctcaccctgtgggttctttcgactccataggg
agaagcccaggggccatgccagggggaagacccctcaagaacctagacagaggtgagagt
atcccaaccatgggtgataggaatggagagtcaaagatgacaaacgaaagtcggcaacct
gttatgcaaatcgctactccaacccctcagtccagtaatggcttcagtggtccaacaacc
gtcctggttcccgccccaatggcagccatgcccaatcctcatatcgccatggcctcccga
cctcatattgtgatgactcctgcccaacttcaattgcaagagcaactccgtgccaaacac
aacgaattgtcccggcggatagtggaacagcaagaggaactcagaagggtctcagagcag
ttggtcatgtcccagtacggcctagtccccgtgactgtaacattccagcaacaacccaca
agtattggatcaaatccatctttgtcgggtctagtatcaaccccacagggaaccgatatg
tccccctacatgcctccgattacgtccaggagtgatatcaccctccacggggccacttcc
atttccagtggtcatccttcgagagaaactggtctgagatctcatgtgttctatacaagt
gtaacgagtaatgattttaacagtgacgccagagacaaattgtga
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