Tigriopus californicus (tidepool copepod): 131884644
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Entry
131884644 CDS
T09700
Name
(RefSeq) gamma-aminobutyric acid receptor subunit gamma-4-like
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04080
Neuroactive ligand-receptor interaction
tcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
131884644
04082 Neuroactive ligand signaling
131884644
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tcf04040
]
131884644
Ion channels [BR:
tcf04040
]
Ligand-gated channels
GABA-A
131884644
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
NUP160_helical_2
Motif
Other DBs
NCBI-GeneID:
131884644
NCBI-ProteinID:
XP_059088466
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Position
8:10588642..10594434
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AA seq
587 aa
AA seq
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MLPILMSYMVHSHLSRGPYQKSSSRSGKGYQWVQLWRMALQLMTLILYEAMFDESQLKWG
VAACNGYFTDFCDNFEAMDGEDSRPYISSFQNSSASLSSSAKRMEGEPMGLILSSLNRTK
RAAGSPSFQPFRNERELSKQISSILDTLFNSGYDHQIRPRVGTQPLEVEVNIAIRSMGPV
DEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKM
TVPNRFIRIAPNGRVSYSQRLTIKARCQMDLRKFPLDTQECPLEIGSFGHDSDEIIYRWS
DKPLSMDKLGLAQYNLINWTFGAFSGQEDSRNISKVFLNFKFERQQGFYLLQIYIPLTLI
VMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCF
LEVFAALVEFAFLNFLDTLVRRLKRKDKDCKLVMLMAQHDVMHGRVPQLPERQESTVMDT
DGICTDEDILTPPDSTTPSRDDKFNFNGRPNDLLRALEEDRDAWTRILDCIIHYLQCFNC
CRSIRKTEMFQKPQVVFNRVDSCSRKLFPFTFLLLNVLYWYGYMYWF
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgcttccaattcttatgtcatatatggttcattcccatttgtcccgcggtccgtatcag
aagagcagcagccgatccggaaaaggatatcaatgggttcagctttggcgaatggcattg
caactcatgaccctcatcttgtacgaagccatgtttgacgagagccaattgaagtgggga
gtggccgcttgcaatgggtactttacggatttctgcgataatttcgaagccatggatgga
gaagactcgaggccctatatctcttcattccaaaacagctctgcctcactttcaagttct
gcgaagagaatggaaggagaacccatggggctaattctgtcttcccttaatcgaactaaa
cgagctgcaggtagcccttcttttcaaccgtttcgaaacgaacgggaactttcaaagcaa
atatcaagcatactcgataccctcttcaattcgggttacgaccatcaaattcgacccagg
gtaggcacacagccgttggaagtcgaggtcaacatagcgatccggagcatgggaccagtg
gatgagcagaagcaaattttctccatggactgctatttcagacaatactggacggacttt
cgacttcgttataacaacactcggctcagggagttgcccatgaactggcaattcctcaac
aagatatggcgcccggatacattctttttcaatgggaaacgctcttacctgcacaaaatg
actgttccaaatcggttcattcgaattgctcccaatgggagggtgtcgtactcccagcga
ctcacaatcaaggccaggtgtcaaatggacttgaggaagttcccattggacacacaagaa
tgcccactcgagattggcagctttggacatgattctgatgaaatcatctaccgatggagt
gacaaacccttgtccatggacaaactgggtctcgctcaatacaacctgattaactggact
ttcggtgcattcagtggacaggaagactccaggaacatctccaaagtcttcctcaatttc
aaatttgagcgccaacaaggcttctacctcttacagatctatattcccctaaccttgata
gtgatgtgctcttgggtgaccttctggctcaggaagacagcgaaaggaagtgagattccc
gcgcgaactagtctgggtgcctcaagtgtgctttcagtggtgaccattggatttgggggc
aaaagcaaaccccaagtggggtacgccacagcattggacgtattcattattctctgcttt
ctggaggtcttcgctgcactagttgaatttgcttttctaaacttcttggacactctggtc
cgacgtctcaagcggaaagacaaggattgcaaattggtcatgctcatggctcaacatgac
gtcatgcatggccgtgttcctcaacttcccgagcgccaagagagtactgtcatggatacg
gatggtatttgcaccgacgaagatatccttaccccgcctgattcaacgacacccagtcgg
gatgacaagtttaatttcaatggccgcccaaatgacctcttgcgagctttggaagaggat
agggacgcgtggacccggattttggactgcatcatacactatttacagtgctttaattgc
tgtcgatcgatccgcaagaccgagatgtttcaaaagcctcaggttgtgttcaatcgtgtc
gacagttgctctcgaaaactgttcccattcacttttctcttacttaatgttctgtattgg
tacggctacatgtattggttctaa
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