Tigriopus californicus (tidepool copepod): 131884796
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Entry
131884796 CDS
T09700
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131884796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131884796
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
131884796
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
131884796
NCBI-ProteinID:
XP_059088665
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All DBs
Position
8:7540065..7543218
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AA seq
984 aa
AA seq
DB search
MLAHKTFLKKTRRGKILKVVREHYLRQDLHCGWKACAHCAVAAPSEASVEAPLNTPLTPP
EVSPCEAVASPHLLILDTNVVLDQIDVLESGHLADVVLLQTVVQEVRHRSSPIYKRLQDL
LAQSQRRFYFFVNEHHADTFVARRPGETPNDHNDRAIRRAALWYRQHLGWAVVLLTQDAD
NRQKAQAQGLIALSVETYVRGLVDQPELADKLAVRAEQAHDLTRPALFPEHWAPAAINRG
VKNGQLLVGVFYLSRTNYTQASINVEGRDQPVLIQGLAHQNRALDGDRVAVELLPAPEWR
AESEVVLEDDGQDPGDTITEDHAVSGSTSRQVQPSGKVVGIVQRKRRQYCGVLLPSPVPQ
ATRHLFVPAEKKIPRVRIETRQVQRLTGQRIIVTIDAWPRHSRYPQGHFVRALGPIGDKA
TENEVLLLEHDIPHSKFSEAVLACLPELPWVITPQDESERVDCRHLDICSVDPPGCTDID
DALHCIQLPNGNFQVGVHIADVSHFIRPNTPIDLEAASRSTTVYLTDRRIDMVPGLLSSN
LCSLRGGVERFAFSCVWEMDPEARIIQTKFHKSIIKSRAALTYEQAQNRIDDPSDETSVT
QSLRQLMSLSKILKQRRLDQGALVLASSEVRFTVDSETADPIDVQVKQMRDTNSMVEEFM
LAANISSAKRIFQEFPDCAMLRRHPAPPPSNFDPLVKAGKRQGYEIKVDSGKALADSLNA
ATDGKNAYFNTMLRMIATRCMMQAVYFASGTIEEPLFQHYGLACPIYTHFTSPIRRYADV
IVHRLLAASIGADSTYPALLDKKSTQNIANNINYRHRMAQYASRASVNLHTHMFFRNKKR
DEIGYVLFVRQNAIQVLIPKYGLEGTLYLRSDTDKSIAFHFDEDEPSQSCGDVTIRLFQK
LRVQLTLDSSNVQHEKLVLRLVEPHIPGFSVEAISDDETSMEEEAPLAGSTPSSKIEANA
KPTRKRSSPQNSKATPKAKKGKKS
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgttggcccacaagacttttctcaagaaaacccgtcggggcaagattctaaaagtggtg
cgcgaacactatctccggcaagatttacattgcggttggaaagcctgcgcgcactgcgcg
gtagctgccccatcagaggcctcagtcgaggcgcccttgaacacgcccttgacgccgccc
gaagtcagcccgtgtgaggccgtggcctcgccccatctgctcatcttggacacgaacgtg
gtcttggatcaaattgacgtgttggagtcgggccatttggccgatgtggtcttgctgcaa
actgtggtgcaagaagttcgccaccgctcttcgcccatttataaacgcctccaagatctg
ttggcccaaagccagcggcgtttctactttttcgtcaatgagcatcacgccgacacgttc
gtggcccgccgacccggcgaaacgcccaacgaccacaatgatcgggccattcggcgagcc
gctctctggtaccgccaacatctgggctgggccgtggttttgctgactcaagacgccgat
aatcgtcaaaaggcccaagctcagggcttaatcgcgctctccgtggaaacctatgtccga
gggctggtcgaccagcccgaattggccgataaactggccgtgcgagccgaacaggcccat
gatttgacccgtccggctctctttcccgagcattgggccccggcggccattaatcgcggg
gtgaagaacggtcagttactggtgggtgtcttctatctgagtcgcaccaattatacccaa
gcttcgattaacgtcgaaggtcgcgatcagcccgtgctcattcaaggcttggctcatcaa
aaccgcgccttggatggcgatcgggtggcggtcgagcttttaccggcacccgaatggcgg
gccgagtccgaagttgttctcgaagatgacgggcaagatccaggcgatacgataaccgag
gaccacgcggtgtccgggagcacgtcgcgccaagttcaaccttcaggcaaagtggtgggg
atcgttcaacgcaaacgtcgccagtattgtggcgtactcttacccagtcctgtgcctcag
gccacccgccacctgtttgtccccgccgagaagaagatcccccgcgtgcgcatcgaaacg
cgccaagtgcagcgtttgaccggccagcggatcatcgtcaccatcgacgcttggcctcgg
cattcgcgttacccgcagggccattttgtacgggcgcttggacccatcggtgacaaagcc
acggagaatgaagtgttgcttctggagcacgacatcccccattccaagttttctgaggcg
gtcttggcctgtttgcccgaattgccttgggtaataacgccccaagacgaatctgaacgc
gtcgattgtcgccatctagacatttgctccgtggatcccccgggttgtaccgatatcgac
gacgcgctacattgtatccaactgccgaacggaaactttcaagtgggcgttcacattgcc
gacgtgtcgcacttcatccggccaaacaccccgattgacctggaggcggctagtcgaagc
accacggtttacctaaccgaccggcgcatcgatatggtaccgggtttgctttcttccaac
ctgtgctcactgcgagggggcgtggaacggtttgcgttctcgtgcgtttgggaaatggac
ccggaggctcgaatcatccagaccaaattccacaaaagcatcatcaaatccagagcggcc
ttaacctacgagcaagctcaaaatcggatcgacgatccatcagatgagacctccgtgact
cagagtctccgccaattgatgtctttatccaagattttgaaacagcgtcgactcgaccaa
ggcgccctcgtattggcgtcctcggaggtgcgctttacggtggacagtgaaactgctgat
cctattgacgtgcaagtcaagcaaatgcgggacacaaactcaatggtggaagagttcatg
ttggccgccaacatctcatcggctaagagaatcttccaagaattcccggattgcgccatg
cttcgccggcatcccgctcccccaccttcaaacttcgatccattggtgaaggccggcaag
cgacaaggttacgaaatcaaggtggattccggcaaggcattggccgactcgctgaatgcc
gccaccgatggcaaaaacgcttacttcaacactatgctgagaatgatagctacccgttgc
atgatgcaagccgtttattttgcgtcaggcaccattgaagagccgcttttccaacattac
ggcctggcctgtcctatttacacgcatttcacatcaccgattcgtcgttatgcagatgtg
atcgttcatcgcctcttagcggccagtattggtgctgattctacctatcctgccttgttg
gacaagaagtccacccaaaacattgctaataacatcaattaccgtcatcgaatggcccaa
tatgccagccgagcttcggtcaatcttcacacgcacatgtttttccgaaacaagaaacgg
gacgagattggttatgttctgtttgtgcgccaaaacgccatccaagtgctgatccccaaa
tatggtctggagggcactttgtacttacgctcagacacggacaagtcgattgcgttccat
ttcgacgaggatgagcccagtcaaagctgcggcgatgtgaccatccggctcttccaaaaa
ctgagagtgcaactgacattggattcgtcaaacgttcagcatgagaaactggttctgagg
ttggtcgagcctcatattccgggattttccgtggaggccatttccgatgatgagacgagc
atggaggaagaggctcctcttgccggttcgacgccttcatccaaaatcgaagccaatgct
aaaccgacgagaaagcgctcttctccccagaattcgaaggcgacacccaaggctaaaaag
ggcaagaaatcgtga
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