Tigriopus californicus (tidepool copepod): 131885210
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Entry
131885210 CDS
T09700
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131885210
Membrane trafficking [BR:
tcf04131
]
Protein recycling
Others
EARP complex
131885210
Endosome - Golgi transport
Tethering complex
GARP complex
131885210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
CCDC113_CCDC96_CC
Motif
Other DBs
NCBI-GeneID:
131885210
NCBI-ProteinID:
XP_059089151
LinkDB
All DBs
Position
8:complement(12828576..12831581)
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AA seq
687 aa
AA seq
DB search
MHSVSSESYFLEEVDSHIQANLGDSVVQEALKNGVDLREYSTQVEDQLKAEENLSIQDYI
QQSQNIASLHNQIVSCDEILERCQNMLLSFQTDLGSISSEIMALQQQSVQMNLKLQNRQA
VRGELSQFVGDMVIPEQMITVILDSPVTDQLFLDQLVALEQKITFLKEQSFREARSCTDV
RDVVEKLKIKAMSKIREFLLDRISQFRKPMANYHIPQNTMLKFSFYFKFLMANDREIAAE
VRDDYCDTMSKVLFSYFKSYSGRLAKLQFDEIATREDLVGAIVETSQRGVAGFFGKTTMK
AKASVFSIGERGQVIDEALEAPIIVPHHVQQKAESKFSYEVLFRSEQFCFLENACREYVF
ITQFFMVEGNELNDLFHLILGKTESLLKKAVDLSVQESYDAISLFLCLHLLFAFRKHCQM
RKIATLDKYWDNLQSTLWHRFRHVMQLNIQSIRDCDPLKLKTVDQRPHLICRRYAELSAG
FMSIQESDPNENISRLLSDLQQEVEYFILKMTSVFDGRKNQLLFLINNYDMILSVLAERV
RNDCQESDSFKDLLATRTSEFVELILESNFGELLRFIKRVEPVIQQDDDDDDAIVTREGA
KVASILKDFNVRWKKALDGINSEILGSFPNFKNGTSILQQTLTQFVQYYHRFYKIMSHPQ
FSSHPERSQLINVHQLMVEVKKFKSNF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcactcggtgtcatcggagagctacttcctggaggaagtggactcgcacatccaggcc
aatttgggcgactcggtggtgcaagaggccttgaagaatggggtggatctgcgggagtac
tcgacccaagtggaggatcaactcaaagccgaggagaatctctccattcaggactacatc
caacaaagccagaacattgcctcgctccacaatcagattgtcagttgcgacgaaatcttg
gaacgttgccaaaacatgttgttgagctttcaaacagatttggggagtatcagttcggaa
atcatggccttgcaacaacagtccgtgcaaatgaacctcaagctccaaaaccgacaggct
gtgcggggcgagttatcccaatttgtgggggacatggtcattccggagcagatgatcacg
gtcatcctcgacagtccggtcacggatcagttgtttctggatcaattggtggccttggaa
cagaagatcacattcttaaaggaacagagcttccgtgaagctcgatcatgcacagatgtg
cgggatgtggtggaaaagctcaagatcaaggctatgtccaagatccgcgagttccttttg
gatcgcatcagccagttccgcaagcccatggccaactatcacattccgcagaatacgatg
ctcaagttcagcttctatttcaagttcctcatggctaatgaccgcgagattgcggccgag
gtgcgcgatgattactgcgataccatgagcaaagtgcttttttcctacttcaagtcgtat
tcggggcgattggccaaattgcaatttgacgagatcgccacacgggaggatctcgtgggc
gctattgtggagaccagtcaacggggcgtggcggggttcttcggcaagaccaccatgaag
gccaaggctagtgtgtttagcattggtgaacgtggacaagtcattgacgaagccttggaa
gcgcccatcatcgtgccacatcacgtccaacaaaaagccgaatccaagttctcgtacgag
gtgttgttccggagtgagcagttttgcttcttggaaaacgcttgccgagaatacgtgttc
atcacacaatttttcatggtcgaaggcaacgagctgaatgatctctttcatctgatattg
ggcaagaccgagtcattactcaagaaagccgtggatttatccgtgcaggagagctacgac
gccatctccttgttcttatgcctccacttgctttttgcattccgaaagcattgtcaaatg
cggaaaattgccacgctggacaaatattgggacaacctacagagcactctttggcatcga
ttccgacatgtgatgcagctcaacatccaaagcatccgcgactgtgatcccttgaaactc
aagaccgtagaccaaagaccccatctcatctgtcggcgctatgccgagctcagtgcgggc
ttcatgagcatccaagagagcgatcccaacgagaacatctctcgacttctctcggatctc
caacaggaagtggaatactttatccttaaaatgacctcggtgtttgatggacgcaagaac
caacttctgttccttatcaacaactacgacatgattctgtcggttttggcggaacgggtt
cgaaatgattgccaggagtctgatagtttcaaggatttgttggctacgcgcacttccgaa
ttcgtggagcttatcttggagtccaatttcggtgagctgctccgcttcattaaacgagtc
gagcccgtgattcaacaggacgatgatgatgatgatgcgattgtgacccgcgagggagcc
aaggtggcctccattctgaaggactttaacgtccgatggaagaaggcattggatgggatc
aatagcgagatcttgggctcgtttccgaacttcaagaacggaacctcgatcctgcaacag
accttgacccagttcgtgcagtattatcatcgcttctacaagatcatgtcgcacccgcaa
ttcagctctcatcccgaacgctcccagttgatcaatgtccaccaactcatggtcgaggtc
aagaagtttaaatcgaatttctaa
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