KEGG   Tigriopus californicus (tidepool copepod): 131885734
Entry
131885734         CDS       T09700                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tcf  Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcf03041]
    131885734
Spliceosome [BR:tcf03041]
 Complex B
  Other components
   Complex B specific factors
    131885734
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_CAF1B_HIR1 LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR41 Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_ACSF4 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_IP5PC_F PROPPIN WDR54 WD_LRWD1 Beta-prop_IFT140_2nd Beta-prop_BBS7 VPS8_N LisH_PAC1 DUF7899 LisH_WDR26 Dimer_MINDY4_N Beta-prop_NOL10_N PD40
Other DBs
NCBI-GeneID: 131885734
NCBI-ProteinID: XP_059089860
LinkDB
Position
1:complement(9584058..9591126)
AA seq 514 aa
MSIEIESADVVRLIQQYLKENNLHRTLHTLQEETSISLNTVESQDAFIADINNGHWDTVL
KAIQTLKLPDKKLINLYEQIVIELIELRELGAARSLLRQTDPMIVMKQNEPERYVHLENL
LARSYFDPREAYPEGGTKERRRAAIAQSLAGEVSVVPPSRLLALLGQALKWQQHQGLLPP
GTQIDLFRGKAAMREQEEERYPTQMVKQIKFGSKSHVECATFSPDGQYLVSGTVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMEEAVLCVAFSRDSEMLASGSVNGQIRVWKVSTGQCLR
KVEKAHGKGITCLQFSKDNSQILSASFDTTVRIHGLKSGKTLKEFRGHSSYVNSATFTID
GHNIVSGGSDGVVKIWNVKTTECMNTFKSLGSNAAGGDIHVNSVHLLPKNPDQIVVCNRT
DTIAIMNMSGQIIRSYASGKREGGDFVACELSPRGDWLYCVGEDFILYCFSAASGKLERT
LNVHEKDVIGICHHPHQNLIGTYSEDGTLKLWKP
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgtccatcgaaatcgaatccgcggacgtggttcgattaatccaacaataccttaaagag
aacaacctccatcgaaccctccacacacttcaagaggaaacgtcaatatcattgaataca
gtggaatcccaggatgcctttattgccgatatcaacaacggtcattgggacacggtccta
aaggccattcaaacgctcaaactcccggacaagaaacttattaatctgtacgagcagatt
gtaattgagcttatcgaacttcgggagttgggagcggctcggtctttgttgcgccaaaca
gaccccatgattgtgatgaaacaaaacgagccagaacgttacgttcatctagaaaacctc
ctggcacggtcctactttgacccccgcgaagcctatcctgaaggaggtacgaaagagaga
cgtcgcgcagccatcgctcaatccttggcgggagaagtgtcggtggtgccaccttccaga
ttactggctctcttgggtcaggccttgaaatggcagcaacaccaaggattactcccgcct
ggaacgcagattgatctgtttcgaggaaaagcagccatgcgtgagcaagaagaagagcga
tacccaactcaaatggtcaaacaaatcaaattcggctccaaatctcacgtggaatgtgcc
accttctcacccgatggtcagtatctggtgagtggcaccgtggatggattcatcgaagta
tggaactttaccacgggcaagatccgcaaggatctaaagtatcaagctcaagacaacttc
atgatgatggaagaagccgtcctttgcgtggcattttctcgggatagcgaaatgttggcc
tctggctcagtgaatggccaaatccgcgtgtggaaagtgagcacgggtcagtgtctcaga
aaagtggaaaaggctcatggaaaaggcatcacatgccttcagttttccaaagacaatagt
cagatcttgagtgcctcattcgacacgacagtccgcattcacggtttgaagtcgggaaaa
acgcttaaggaattccgaggtcactcttcttatgtgaacagtgccaccttcacgattgac
ggccataacattgtcagtggcggttcagacggggtcgtgaagatctggaatgttaagacg
accgagtgcatgaacacgttcaagtctttgggcagcaacgcggctgggggcgatattcat
gtcaatagtgtacatcttttacccaagaaccccgaccaaattgttgtttgcaaccgcacc
gacaccattgccatcatgaatatgtctggacagatcatccgatcctacgcttcaggaaaa
cgtgagggaggcgacttcgtggcttgcgaactttcaccacgaggagattggttatactgt
gtgggggaagatttcatcttgtactgcttctcggctgcgtctggcaaactcgagagaaca
ctgaacgtccatgaaaaagatgtcattgggatatgccaccacccgcatcaaaatctcatc
ggcacatattcagaggacggcacgctgaaattgtggaagccctaa

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