KEGG   Tigriopus californicus (tidepool copepod): 131885991
Entry
131885991         CDS       T09700                                 
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03013  Nucleocytoplasmic transport
tcf04141  Protein processing in endoplasmic reticulum
tcf04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    131885991
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    131885991
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    131885991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcf03019]
    131885991
   04131 Membrane trafficking [BR:tcf04131]
    131885991
Messenger RNA biogenesis [BR:tcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     131885991
Membrane trafficking [BR:tcf04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    131885991
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    131885991
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    131885991
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I ANAPC4_WD40 Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st
Other DBs
NCBI-GeneID: 131885991
NCBI-ProteinID: XP_059090181
LinkDB
Position
1:1551845..1553282
AA seq 325 aa
MVSLESTVDTGHDEMIHDAAMDYYGRKLATCSSDRSVKIFEMSENGVQTLVADLKGHEGP
VWQVGWANPKYGTILASCSYDRKVILWREDSPGRWNRLYEYTGHDSSVNSVSWAPHELGL
ALACGSSDGAISILTYIDSANNWKAEKIPNAHTIGCNAVSWAPYLFQQTERRFVSGGCDN
LVKIWKYDHKESKWVEECKLEAHSDWVRDVAWAPSLGVNRSVIASCSQDRRVIIWSNDGG
VGSTSWTPRTLNTFDDVVWHVSWSVSGNMLAVSGGDNKVTLWKETLDSQWVNISDVSKGQ
GASQSSGPAQTGTGPPLPVAAVGSS
NT seq 978 nt   +upstreamnt  +downstreamnt
atggtgagtttggaatcaacggtggacaccggtcacgacgagatgatccatgatgctgcc
atggattattacggacgcaaattggccacgtgctcctcggatcgatcggtcaagatcttc
gagatgtccgaaaatggcgttcaaaccctcgtggccgatctcaaaggccatgaagggcca
gtgtggcaagtgggttgggccaaccccaaatatggaaccattttggcatcttgcagctac
gatcgaaaagtaatcctatggcgcgaggattcaccgggtcgttggaatcgattgtatgaa
tacactggacacgattcctcggttaattcggtctcttgggcgcctcatgagctaggtcta
gccttggcgtgtggatcgtcggatggagccatctccattttgacctatatcgattcggcc
aataattggaaggcggaaaaaatccccaacgcccacaccattgggtgcaacgcggtatct
tgggcgccttatttgttccaacaaaccgagcgccgtttcgtcagtggaggatgcgacaat
ttggtgaagatttggaagtatgatcacaaggaatccaaatgggtcgaagagtgcaagctg
gaagctcattccgattgggtgcgagacgtggcgtgggctccatcgttgggcgtgaaccgc
tccgtgatcgcatcgtgctctcaagatcgccgtgtaattatttggagcaatgatggcggc
gttgggtccacctcctggacaccgcggaccctcaacacctttgatgatgtggtgtggcac
gtcagttggtccgtctccggtaacatgctggccgtttccggtggtgataacaaagtaact
ctgtggaaggaaaccttggacagccagtgggtcaacatctcagatgtgagcaaagggcaa
ggtgcgagccaatcctctggtcctgctcagacagggaccggccccccgctccctgtggct
gccgtgggctcaagctaa

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