KEGG   Tigriopus californicus (tidepool copepod): 131886134
Entry
131886134         CDS       T09700                                 
Name
(RefSeq) DNA-binding protein SMUBP-2-like
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
tcf  Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tcf03009]
    131886134
   03012 Translation factors [BR:tcf03012]
    131886134
Enzymes [BR:tcf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     131886134
    5.6.2.5  RNA 5'-3' helicase
     131886134
Ribosome biogenesis [BR:tcf03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   131886134
Translation factors [BR:tcf03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    131886134
SSDB
Motif
Pfam: AAA_11 AAA_12 SMUBP-2_HCS1_1B R3H AAA_30 AAA_19 zf-AN1 Viral_helicase1 ResIII AAA_22 DEAD AAA_16 SLFN-g3_helicase Flavi_DEAD nSTAND3 AAA UvrD-helicase Helicase_RecD NTPase_1 IstB_IS21 cobW UvrD_C_2 RuvB_N AAA_25 NPHP3_N CbiA
Other DBs
NCBI-GeneID: 131886134
NCBI-ProteinID: XP_059090373
LinkDB
Position
9:complement(3013478..3025699)
AA seq 975 aa
MVGRESFVSDQRRWLQKEREAELEQSQALCDRLDVRELERRGLALRHLRISAQSTGLYGR
TLLTFEPAQIHRKELPAHSITSGDIVGASNTNEGSESVSGVVIGVSSSAVQVSFEESLDV
IPIDSDGVVNITKLANEVTHKRLKTALNYIETGSHSILDNCLLGNSTLSAPLQTLPPQIL
NGENLIQHVNEQLDDSQKEAVRFALLQKELAVVHGPPGTGKTTTIVEIITQAVKSGLKVL
CCAPSNVAVDNLLARLVKNRIKVVRLGHPARVNVKLQKFSLDAHINMSDQTQLVRDIRRE
IDGNFVKMKKSRSKGEQSGLRREIKELRKELHERERNAVKEILRHSEVVLSTLTSASVEG
PLRHVKERHFNITVIDECSQALEMACWIALPFAPKAILAGDHLQLPPTIMSEEAAREGLN
FTLMERVIKELGSDVVRMLKVQYRMNEQIMTWASDALYKGEVKAHGSVKSHLLRDLPNVK
DNENTSVPLVLIDTTGCDMYEMATPDEISKANEGEVALVCLHVEELISSGLNPADIAVIT
PYNLQVELIRLQLSSKYPKLEIRSVDGFQGREKEAVVLSLVRSNPNREIGFLAESRRLNV
AVTRARRHVAVICNSETVSTDKFLQDFITYLEEHGEVRTGMQYQNGIDSLDLVRPEGMTL
TIKDEVKPQESGKESRKKPEKKKRSCDVKTIKKKIPEAEVRSSEPANEEVKKRFHKDEIS
AEEQETADELKREKFTSVIENFIASGEGIHNLSPELNSHDRMVVHEIAKSHGLIHESTGE
GRKRHIVLKKLAPVPPKEEKVQVKSDYVQCSGCLARMPKANIELHKIRCEKSPLQPFIPP
APKVTGVKPKKPKKQTQAQKEEEDIDQLLASFSKIDNVCNGEKCKAKILNLGVTCQFCRV
RFCIEHSLPEAHGCGDAARRAARQQISRDGRIYSGSGRPSMKPDAVKRAQIQKKLDKKLN
SLSDERKPKKPEKKS
NT seq 2928 nt   +upstreamnt  +downstreamnt
atggtgggtcgagagtcctttgtatccgaccaacggcgctggttgcagaaagaacgtgag
gctgaattggagcagagtcaagccttgtgcgatcgattggacgtacgggaattggaacgc
cggggattggccttgcgacacctccggatctcggctcaaagcaccggactttatggacgc
acccttctgacgtttgagccggctcaaatccatcggaaagaactccccgcccacagcatc
acctccggcgatatcgtgggcgcttcgaacaccaatgagggctctgaaagcgtctctggc
gtcgtcattggagtgagttcgtcggccgttcaagtctcctttgaggaatcgctcgacgtg
attccgatcgactctgacggagtggttaatataaccaagttagccaacgaagtgacacac
aaacgcttaaagaccgctctcaattatattgaaaccggttcacactctattcttgacaac
tgcctcttggggaactcaactttaagtgcgcctcttcaaacccttccaccacaaatcctc
aacggggaaaacctcattcagcatgtcaatgaacaattggacgattcccaaaaagaggcg
gtccggttcgcgctcctccaaaaggaattggccgtggttcacggcccaccgggaacgggt
aagaccaccaccattgtggaaatcatcacacaggccgtgaaatcagggctcaaagtcctc
tgttgtgcgccttcgaatgtggctgtggataatttattagctcgcctggttaaaaatcgc
atcaaggtggtgcgattggggcatcccgctcgagttaatgtgaagcttcaaaagttctcg
ttggatgcccacattaacatgagtgatcagactcaattggttcgagacattcgtcgcgaa
attgacggaaactttgtgaaaatgaaaaaatctcgctccaaaggggagcaatccggattg
cgacgcgagatcaaggaacttcggaaagagctccatgaaagagaacggaatgccgtgaaa
gagattctgcgtcattccgaggtcgtgctttcaactttgacgtcggcctcggttgaggga
cctttgagacatgtgaaggagcgacatttcaatatcacggtcatcgatgaatgctcgcag
gccttggaaatggcctgctggattgcccttccattcgcacccaaagccattttggcagga
gatcatctccaacttcctccgaccatcatgagcgaagaagctgctcgagaaggtctcaat
ttcacactgatggaacgagtcatcaaggagttgggatcggacgtggttcgcatgctcaag
gttcaatatcgaatgaatgagcaaattatgacctgggcttccgatgctctttacaaagga
gaagtaaaggctcatggaagtgtcaaaagtcacttgctcagagatctacccaatgtcaag
gacaacgagaacacaagcgtgcctttagttctcattgatacaactggttgtgatatgtac
gaaatggcgacaccagatgagatctccaaggccaatgagggcgaagtggctcttgtctgt
cttcacgtggaagaacttatttcaagcggcttgaatccagcagatattgccgtgattacg
ccgtacaatctccaagtggaattgatccgtcttcagctctcatccaaatatccgaaactc
gaaattcgctccgtggacggcttccagggacgggaaaaagaggccgtggttctgtccttg
gtacggtccaatcccaaccgtgaaattggcttcttggccgagtctcggaggttaaacgtg
gccgtgaccagagccaggcggcatgtggccgtgatttgcaattcagaaaccgtttccacc
gacaaattcttgcaagacttcatcacttacctggaggaacacggagaagttcgaactgga
atgcaatatcaaaatgggattgattccctagaccttgtgcgacctgaagggatgactctg
acgatcaaagatgaagtgaaaccgcaagaaagtgggaaggagtctcggaaaaagccagaa
aagaaaaaaagatcatgtgatgtgaagacgataaagaagaaaattccggaggctgaagtt
aggtcaagcgaacccgcgaatgaagaagttaaaaagcggttccacaaggatgagatttcg
gctgaggagcaagaaactgccgatgaattaaagcgggagaagttcacttccgttattgaa
aatttcatcgcctcaggggaaggcatccataacttatcacctgaattaaactcccatgac
cgaatggtggtccacgaaattgccaaaagtcacggactgattcatgaaagcacgggggaa
ggtagaaagcggcatatcgttttaaagaaattggccccggtacctcccaaagaagaaaag
gttcaagtaaaaagcgattacgttcaatgttcgggttgcttagcccgaatgccgaaagcg
aacatagagcttcacaaaatccgatgcgaaaagtctcctcttcaaccctttatcccaccc
gcccccaaagtaacaggagtcaagcccaagaagcccaagaaacagactcaagcccaaaaa
gaagaagaagatatcgaccagttgttggccagtttctcgaaaatcgataatgtctgcaac
ggtgagaaatgcaaggccaagattttgaatctgggggtcacgtgccagttttgccgagtt
cggttctgtatcgagcacagtttacccgaggctcacggctgtggagatgccgctcgacgt
gcggctcgacaacagatctcgcgggatggtaggatctattcagggtcgggtcgaccgtcc
atgaagccggatgcggtcaaaagagcgcaaatacagaagaagctggacaagaagttgaat
tcgttgagcgacgagcgaaaacccaagaagccggagaaaaagtcatga

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