Tigriopus californicus (tidepool copepod): 131886373
Help
Entry
131886373 CDS
T09700
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131886373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131886373
Spliceosome [BR:
tcf03041
]
Complex C
Other components
Step II factors
131886373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
WD_LRWD1
WDR54
PQQ_2
Motif
Other DBs
NCBI-GeneID:
131886373
NCBI-ProteinID:
XP_059090660
LinkDB
All DBs
Position
9:complement(2600852..2603335)
Genome browser
AA seq
581 aa
AA seq
DB search
MDTLANYGSGSSGEDSEDDQMPQVKPKKISAEESLHLQPTTSSFAKKMEVAITNAAPLVQ
PNEAMDPRRHLDPNTKEVKYNPRYEDLYAPVVGPANPHQSEQEKAPKNMLTGFTEEAHLS
DFQFELQRKTFHSYGYAQDPSVNVEGEGIKVIGKIENVEEVDSLKTVFEDTEVRPKDKRK
RLKNADPSDIEGYLGPWGAFEDQEKTSAPSTEDKEFLEEYMAKMKKRAKKQTDDKPIEEK
TTLHIKDPYDYQGRSFLHIPQDVGVNLKSDVPPEKCFIPKRQIHTWTGHTKGVSCMQWFP
RSGHLLLSGGMDSKVKLWEVYNNRRCVRTYVGHKMAVKAIDFNNAGNKFLSTSYDRHIKL
WDAETGDCIGRFSNNKVGHCIKFNPDEDKQDLFVVGTADKKIVCWDIRSNEIVQEYDRHL
GAVNTITFVDENRRFVTTSDDKSMRVWEWDIPVDMKYIADPSMHSMPAVAKAPNEKWLAC
QSLDNKICIFTCGEKFRPYKKKEFKGHMVAGYACQMSFSPEMSYLASGDGDGKVCIWDWK
TTRMVAKWKAHDRTCISVLWHPHETSKLASAGWDGSIKYWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggacacattggctaattatggctcgggatcctcgggcgaggactcagaggacgaccaa
atgccccaggtcaagcccaaaaagatcagcgcagaggagagccttcatttgcaacccacc
acatccagttttgccaagaaaatggaggtggcgataacgaacgcggcgccattagtccaa
cccaatgaagccatggatcctcgtcgtcatttggatcccaacacgaaggaagtcaaatat
aatcctcgttacgaggatctgtatgcgcccgtggtgggacctgctaacccgcatcaatcc
gaacaagaaaaggcgcccaagaatatgctcaccgggttcacagaagaggcccatttgtcg
gatttccagtttgaattgcaacggaaaacctttcatagctacggatacgctcaagatcca
tccgtcaacgtagaaggggaagggatcaaggtgattggtaagattgaaaacgtggaagag
gtcgactcgctcaagacggtttttgaagataccgaggtccgtccgaaagacaaacgaaaa
cgtctcaagaatgccgaccccagtgatatcgaagggtacttgggtccctggggtgcattt
gaggatcaagagaagaccagtgctccttcgaccgaggacaaggagttcctggaggagtac
atggccaaaatgaagaagcgcgctaagaagcaaactgacgacaaacccatcgaagaaaag
accaccctgcacatcaaagatccgtacgattaccaaggtcggtcgtttctgcatattccc
caggatgtgggcgtaaacttgaagtctgacgtaccccccgaaaagtgcttcattcccaag
agacagatccacacgtggaccggccacaccaagggcgtgtcctgcatgcaatggttcccc
agatctggccatctcctactatccggaggcatggactcgaaagtgaagttgtgggaagtg
tacaacaatcgcagatgtgtgcgcacctacgttggccataagatggcggtgaaggccatt
gatttcaacaatgccggtaacaagttcctctccaccagttacgatcggcacatcaagctt
tgggatgcagagaccggagattgtattggacgattctcgaacaacaaagtgggtcattgc
atcaagttcaatccggacgaggacaagcaggatctgtttgtggtgggcacggcggacaag
aagatcgtgtgttgggatatccgatccaacgagatcgttcaagagtacgatcgacatctc
ggagccgtgaatacgatcacgttcgtggatgagaatcgacgatttgtgaccacgagtgat
gacaagtccatgcgcgtttgggaatgggatattcccgtggacatgaaatacattgcggac
ccgtccatgcactccatgcctgccgtggccaaagctccgaacgagaagtggctggcttgt
cagtcgttggacaacaaaatctgtatctttacttgtggcgagaaattccgtccgtacaag
aagaaagagttcaaaggtcacatggtggctggatatgcgtgtcaaatgtcgttctctcca
gaaatgagttacttggccagtggtgacggagatggaaaggtttgcatatgggattggaaa
accacgcgaatggtggccaaatggaaggcccacgaccgtacctgcatttctgttctttgg
catccgcacgaaacgagcaaactggcctcagccggttgggacggaagcatcaagtattgg
gattag
DBGET
integrated database retrieval system
