Tigriopus californicus (tidepool copepod): 131886854
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Entry
131886854 CDS
T09700
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131886854
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
131886854
NCBI-ProteinID:
XP_059091263
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All DBs
Position
9:complement(9217721..9226180)
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AA seq
1837 aa
AA seq
DB search
MKPIIPLLALGLVSLSESYTPVSRGCEERSCYPATGNLLIGRQDKLEATSTCGLERRERY
CILSHLEYSRRDQKCFWCDSTDQGVEQNPQTSHRIENLVYRMEPPDAEPARQYRTWWQAQ
NGVENVTIQLDLEAEFHVTHLIITFKTFRPAAMYIEKSYDWGQTWKIHRYFAYDCARSFP
GIYEGAPRYLNETVCQRRYSRLTPTTFGSVIYRVLPPNINIHSPGFNPYSKEVQDLLKTT
NLRIHMTKLHTLGDENLETERLDIKEKYYYSIYDMTVRGSCSCYGHAERCLPEKVEHEAI
MGMVHGKCDCTHNTKGNNCEYCLDDYNDVPWQPATGKKKNECKKCNCNDHASSCYFNQYV
YAATGNVSGGVCNNCSHNTDGIHCEYCKEGFFQVPELELNDPNICEQCDCEPDGTIDGGL
CDGRTDPEEGLLAGQCHCKTNVGGERCDRCMNGFWNFTLDNPDGCQECKCMLEGIVSNDG
CDQVTGDCTCKRFVVGRDCDQCMPQHYGLSMDDPNGCKACDCDIGGSYDNNCDVMTGQCK
CRPNIGGRRCDTVDDGYYSGGLDFLLFEGELAFGSQNPPTKVIRKEPSSRPEDNTWTGFG
YMQVYEGSTLTFDVPAIFKDLDYDLVVRYQQQPNHPNPWDNAKIELIRIDGAPDPNGKCN
ETNDGPTQFSMPNNQRHTIVGNPVCLEEGQRYQIKLTFDQYDPNTPDPKSNILIDSIALI
PRTESLEIFEGSPMAEQKREEYENYRCRDLFLAVPTPEIPEECRALLNSISYYTFEGGYN
KPCECDNTGSESTLCDKYTGRCPCKKNVVGRRCDRCAPGTFGFGASGCQPCNCHNVGSLD
PFCRETDGQCNCAEKAYGRRCNECQPGFWNFPNCQPCQCNGHADICEAQTGQCINCRDAT
DGPECGVCLEGYYGDPTLEANIPCRECPCPNTKASGHSFAERCFLDTTNNEPVCECDLGY
SGARCDVCSDNYYGNPEIPGGSCVSCNCSENWNFQDTGNCDSSSGQCLKCLFNTEGDHCE
YCQAGFFGDAVQGQCEACICNILGTDPNRFDCDRFTGECHCLPNVEGRECDRCRENHWKL
ASGEGCEHCDCDFVGSTSETCNVFDGQCACKPGFGGRRCDQCEENYWGDPRVECYDCNCN
PQGSQSFQCDHQTGKCVCLEGIGGEKCDECARGFVQEMALTSDHPVLDRKIPFTDLPRCV
ECGECFTNWDRILLGLQNQTRDQVQRAEQVKITGVTGAYTRDFVDMEDTLREVKGILTSA
SVSNDELIGVQADIDRINVALQGTNQNMEELDNNLSNLQQSILQGSSSLDFLRKEADTLK
LNAQDMKEQITSLQEANVEGALNLTRQAKRRSDEAAVQVRGIETEGGLLANSEKQRKATE
TLMNTSKDQFTSTQEQNQQKLNDILVQIDNLEAKIPDLNRQICDGDTGADQPCDTLCGGA
GCGKCGGISCLNGALSKAEEAVSSAKAADEVFSEKDREAERVLRDITKTHQNALGAVQEA
QRAFDLANEAKNRSVGETTRVDSLVDSINVYTSGDKASPEDVQKLADECLAAEMDLDSSE
ISGLAQEINSAIDSVTNVDQILAETADDLNRAQELQRRADFTKQNAEEQLKHAEEVTNFL
SQAVEAQNMADISIQSAQEDIDSARKDLSQIASGMDEAIRSVDQSLMDVQDLARRQQSLQ
TSFIRNAKRVNASRDAATKAKNQASEDNTELYNLNLEFKNVSGSLDAKTNSIGSAKDLAV
DLQRRASELATSASNKLTNIQDVEKEFEETERRLQELSSELMALNCEMNIHLQVIEDKSN
YYRTCSPPSTWSPSATCVCRPGALEPSCNSRRAIYER
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcatacctcttctggccttgggcctggtctcattgtcagagagttacaca
cctgtgagccgtggttgtgaagagcgatcatgctatccagcgacgggtaatctactcatt
ggacgacaagacaaactggaagccacttccacttgtggcttggagaggagggaacgctat
tgtattctctcacatttggaatattcgaggagggatcaaaaatgtttctggtgcgattct
acggaccaaggggtcgagcaaaaccctcagacttctcaccgaattgaaaatctggtctat
cgaatggagcccccagatgccgagcccgcccgccaataccgtacttggtggcaagctcaa
aatggggtggagaatgtcaccattcagttggatctggaggcggaatttcacgtgacccac
ttgatcatcactttcaagacgtttcgaccggcggccatgtacattgaaaagtcctatgat
tggggtcagacttggaagattcatcgatatttcgcctacgattgtgccaggtcctttccc
gggatttatgaaggagctccacggtatctgaacgaaaccgtttgtcaaaggcgttactcg
cgactcacgcccacaacttttgggtcggtgatttaccgagtgctgccccccaacatcaac
atccacagccctggatttaacccatactcgaaggaagtgcaggatttactcaagaccacc
aatcttaggatccatatgaccaaacttcatactctgggagatgaaaacttggaaacagag
aggctggacatcaaggaaaaatactactactccatttacgacatgacagtccgtggatct
tgctcttgctacggtcatgcggagcgatgccttcccgaaaaagtagaacacgaggcgatt
atgggcatggttcatggcaaatgtgactgcacccataacacgaaaggaaataattgcgaa
tactgcttggacgattacaacgatgttccttggcaacccgcgacaggaaagaagaagaac
gaatgcaaaaagtgcaactgcaatgaccatgcttcgagttgttacttcaatcaatacgtc
tatgctgccacaggaaatgtgagtggtggggtgtgtaacaactgctcacataacaccgac
ggtattcattgcgaatattgcaaagaaggctttttccaagtgcccgaattagagctgaat
gatccaaacatttgtgaacaatgtgattgtgaacctgatggaaccattgatggtggtctt
tgcgatggtcgcactgatcccgaagaagggctcttagccggccaatgtcattgcaagaca
aatgttggcggagagcgttgtgaccgatgcatgaatggcttttggaacttcacactagat
aatcccgatggatgtcaagaatgcaaatgcatgctagagggcattgtttccaatgatgga
tgcgatcaagtcacaggcgattgtacttgtaaacgattcgtggttggaagggattgtgac
caatgtatgccacaacattatgggttatcaatggatgatcccaatgggtgcaaagcttgc
gattgtgatatcggtggttcttacgataacaactgtgatgtcatgacgggtcaatgtaaa
tgccgacccaacattggtggacgacgttgtgataccgtggatgatggatattattccgga
ggattagattttctgctcttcgagggagaacttgcgtttgggagtcaaaatccgccaacc
aaagtaatcaggaaggaacccagttcgcgaccggaagacaacacttggacgggctttgga
tacatgcaagtctacgaaggatccacgctcacttttgatgtaccagccattttcaaggac
ttggattacgatctcgtggtccgatatcagcaacagcccaaccatccgaatccttgggac
aatgccaaaatagaactcattcgaatagatggagcaccagatcccaatggaaaatgtaat
gagaccaatgacggaccgacccagttctccatgccaaacaaccaaagacacaccattgtg
gggaatcccgtgtgtctcgaagagggacaacgctatcagatcaaactgaccttcgatcaa
tatgaccctaacaccccggatcccaagtccaacatcttgattgattcgattgccttaata
cctcgaaccgagagcttggaaatctttgaaggatcgcccatggccgagcaaaagcgggaa
gagtacgaaaactatcgttgtcgggacttgttcctcgccgttccaacgccggagattccg
gaggagtgtcgagcactcttgaactcgatctcctactatacttttgagggtggatataac
aaaccttgcgagtgcgacaacacgggatccgaatcgaccctttgcgacaaatacactggt
cgttgtccttgcaagaaaaatgtcgttggaagacgatgcgatcgttgcgctccgggaacc
tttgggtttggtgccagtggatgccaaccttgcaattgccacaatgtgggatccttggat
cctttctgtcgagagactgatggtcaatgtaactgtgccgaaaaggcctatggtcgacga
tgtaacgaatgtcaacctggcttctggaacttccccaactgtcagccttgtcagtgcaat
ggtcatgctgatatatgtgaagctcagaccgggcaatgcattaactgtagagacgccacg
gacggtccggaatgcggagtctgtcttgagggttattatggggatccaactttggaggcc
aatatcccgtgccgtgaatgcccttgtcccaataccaaagcgagtggccactcatttgcc
gagcgatgctttttggataccactaacaacgaacccgtctgtgaatgtgacctgggatac
tcaggtgcccgttgtgacgtttgttctgacaactactacggcaatccagagattcccgga
ggatcttgtgtctcttgtaactgcagtgagaactggaacttccaggacacgggcaattgc
gactcgagttcgggtcagtgcttgaaatgtttattcaacaccgaaggtgatcactgcgaa
tattgccaagccggattcttcggagatgctgttcaaggtcaatgtgaggcttgcatttgt
aacatcttgggcacagatcccaatcgttttgactgtgatcgatttactggagagtgccat
tgcttaccgaacgtggagggccgagagtgcgacagatgtcgagaaaaccactggaagcta
gcaagtggtgaaggttgcgagcattgtgattgtgacttcgtaggctctacttccgagact
tgcaacgtgtttgatggccaatgtgcttgtaagcccggatttggaggccgtcggtgcgat
caatgtgaagagaactattggggagacccaagagttgaatgctacgactgcaattgtaat
ccacaaggatcacaatcattccaatgcgatcatcaaactggcaaatgcgtttgtcttgaa
ggcattgggggtgagaaatgtgacgaatgtgcccgcggctttgtccaagaaatggcctta
acatcggatcatcccgttttggaccggaaaatcccattcacggatctcccaagatgtgtg
gagtgcggggagtgcttcactaattgggatcgcattcttttgggacttcaaaaccagacc
agggatcaagtacaaagggccgagcaagtcaaaatcaccggagtcaccggcgcctacact
cgagatttcgtcgatatggaggacactttgagggaagtcaagggtattctgactagtgct
tccgtatccaatgatgaactgattggtgtgcaagcagacattgatcgaattaatgtggcc
ctacaaggaaccaatcaaaatatggaggaactggataacaatctcagtaatctccaacaa
tccattttgcaaggctcgtccagtttggactttttgagaaaagaggccgataccctcaaa
ctaaatgcccaagacatgaaggaacaaattactagcctccaagaggccaacgtagagggt
gctctcaatctgactcgtcaagccaagcgtcgatctgatgaggctgcagttcaagttcgc
ggtatcgagaccgagggcggattattggccaactctgaaaagcaacgcaaagccactgag
actctcatgaacacctccaaagatcagtttacgagcacccaagagcaaaaccagcaaaag
ttgaatgacattcttgtccaaatcgacaacttggaggcgaaaattccggatttgaatcga
cagatttgtgatggtgataccggagcggaccaaccttgcgatacactttgtggaggtgca
ggttgcgggaaatgtggaggcatctcttgtctcaatggtgctctttccaaagctgaggaa
gccgttagttcggcgaaggctgccgatgaggtcttttctgaaaaagacagggaagcagag
agagttttgcgcgatatcacgaagactcatcaaaacgctttaggggccgttcaagaggca
cagagagcatttgacttggctaatgaagccaaaaatcgatcagtgggagaaaccacacga
gtggatagcctcgttgatagcatcaatgtttacacatcaggagataaagcctcacccgaa
gacgttcaaaaacttgccgatgaatgtttggcagcggaaatggatttggattcctcagaa
atcagtggattggcgcaagaaattaactctgccatcgattctgttaccaacgtggatcaa
attttggccgaaacggctgatgatcttaatcgagctcaagaattgcaaagaagggccgat
ttcacgaaacaaaacgccgaagagcaactcaaacatgccgaagaggtcacaaacttcctc
agccaggcggtagaagcccaaaatatggcggacatttccattcagagcgctcaagaggac
atcgattcagcgcggaaggacctctctcaaatcgcgagtggcatggatgaagccattcgc
tccgtggatcaatctctcatggatgtccaagatctagcacggcgtcagcaatcgctacaa
acgagctttattcgtaatgccaagcgagtcaacgcctctcgagatgcggccaccaaggcc
aaaaaccaagccagtgaggataataccgagttgtacaatctcaacctcgagttcaaaaac
gtgagtggtagtctggacgccaagaccaattccatcgggagtgccaaggacctggcagtc
gacctccaacgtcgagcgagtgagttggccacatccgcttcgaataagctcaccaacatc
caagatgtggagaaggagttcgaagaaaccgagcgacgtcttcaagaactgtcgtctgag
ttgatggccttgaattgcgagatgaacattcatttgcaagtgatcgaggacaagtcgaat
tactatcgcacgtgttccccacccagcacttggagtccgtccgctacttgtgtgtgtcga
ccaggagctctcgagccatcttgcaacagtagaagagccatttatgagcgatga
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