Tigriopus californicus (tidepool copepod): 131886858
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Entry
131886858 CDS
T09700
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04140
Autophagy - animal
tcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
131886858
04148 Efferocytosis
131886858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131886858
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131886858
Hops complex
131886858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_CDC20-Fz
SidM_Rab1-act
Motif
Other DBs
NCBI-GeneID:
131886858
NCBI-ProteinID:
XP_059091268
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Position
9:9253946..9256548
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AA seq
822 aa
AA seq
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MTEISAQWIPLGSFTFTRSDIYSSAWCESMVGVEHLVGGAWGGPILTLAEGFVHVFRASG
GELAHWKWKNGRVIAMGWSNRQEAVLVTEDGSVFVFSILGELTSAFTMGPEAKDLKITSA
RVFNTAFGTGIAVLTTAKRFFVVNNIVEPRVRKMVDLDLSTEVQPRAWSVLTDDRQARIL
VAHGSEVRVISPNEQFVAACTTDAVPKGNVQQIAVSVSGEQFAVSFEDGRLWLGTLETKF
CHAQMTKAAMGGMDIVWCADKAVIGFDKNAVMCHLVTIEGQQEDLFLTNYLTAVPELDGI
RVMSLSGQEFIHQVPDPLLDTFSIGSVGPGAMLRLATDEFYHRSHKANDYVKLVEAQLEE
AVLNCIECATYLFDPLLQKEMLRAAQFGKSFLKGASSTSDKFTHMCVTLRVLNALRNYKV
GIPLTIDQYNHLTPEVVIDRLLSQRLYALAFQLCNALKLPQHLGECRVLAHWACYKVSKD
GEEDNQVARDISQRLGSQSQISYCDIAAKAAESGKKELAVKLLEHETRISKQVPLLVKLG
KESTALMKALNSGNRDLAFTVILHVRRTLDSARFSFLIRKFPLAKVLYVGFCADNDPEAL
EEWFIQEDDFTSLAQFSFKRAYDSGTMDQRLSHLHNAVENWRKCKMEGYANMAEENQKLL
KQQSVLEDKVQQTLVGKTLNQTIFDLLTSNETKLADKLRNDFKMSDKRYMFFRVKALAKT
QKWPEIKKLAKQKRQPLSTVSIVRLVREFGGDAQAKEFLNDEFLSPNERFDTYAEFGMFF
EAAQAAFVAKSLESLNALETMSMGRDDVIRAISNFKTRLLTK
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgacggagatctcggcccaatggattcccttgggttcgttcaccttcactcgctccgac
atctactcctcagcctggtgtgaatccatggtgggcgtcgaacacctggtgggcggagcc
tggggtgggcccattctgacgctagccgagggctttgtccacgtcttccgagcctcgggg
ggtgaattggcccattggaaatggaagaacggccgcgtcatagccatgggctggtccaac
cgtcaggaagccgttctcgtcaccgaagacggatccgtgttcgtgttctccatcttgggc
gaattgacgagcgccttcaccatgggacccgaggccaaagacctcaagatcacgagcgca
cgtgtcttcaatacggcctttggaacgggcatcgccgtgctcaccacggccaaacgtttc
tttgtggtgaataacatcgtggaacccagagttaggaagatggtggatctggatctgtcc
acggaggttcaacctcgagcttggagcgtgttgaccgatgatcgacaagctcgcattctc
gtggcccatggcagtgaggtgcgggtcatatcacccaatgaacaatttgtggcggcatgt
actacggatgccgtgcctaaaggtaatgtgcaacaaatcgccgtcagcgtgagtggcgag
caattcgccgtgtcctttgaggatggccgattgtggttgggcaccttggaaaccaagttc
tgtcatgcccagatgacgaaggcagcgatgggtgggatggacattgtttggtgcgccgac
aaagccgtcataggttttgataaaaatgctgtcatgtgtcatttagtcacgattgaaggc
cagcaagaggacttgtttctgactaactacctgacggccgtgcccgaactcgacggtatc
cgggtgatgagcttgagcgggcaagaatttatccaccaagtccccgatccgctgctagac
accttcagcatcggcagtgtaggtccgggcgccatgctccgtttggctacggacgaattc
tatcatcgaagtcacaaggccaacgattacgtcaaattggtcgaagcccaattggaagag
gccgttttgaattgcatcgagtgtgccacgtacctgttcgaccctttgctccaaaaggaa
atgctccgtgcggcgcagttcgggaaatcgttcctgaaaggggccagttccacctcagat
aaattcactcatatgtgcgtcactttgcgggtgctcaatgctctgagaaactacaaggtg
ggaatcccattgacaattgaccagtataatcatttaactcccgaagtcgtgattgatcgc
ttgttgtcccaaaggctttatgcgctggcttttcaactctgcaatgccctcaaactaccc
cagcatttaggcgaatgtcgggtcctagcccattgggcttgttataaagtaagcaaagat
ggcgaagaggataaccaagtggctcgagatatcagccaacgattgggcagccaatcccag
atttcatactgtgatattgcagccaaagccgctgaaagtggcaagaaggaattggccgtc
aaacttttggagcatgagacccggatcagcaaacaagtcccattattggtcaagttgggc
aaagagtccacggctcttatgaaagccttaaacagtggtaatcgcgacttggccttcacg
gttattctgcatgtccgtcgaactctggattcggcccggtttagttttctcattcgaaaa
ttcccattggctaaagttctttacgttggtttttgtgccgataacgatcctgaggctctg
gaggagtggtttatccaagaggacgattttacgtccttggctcagttctcgttcaagcga
gcttacgattctggaacgatggatcaacgattatcccatctacataatgccgtagaaaat
tggagaaagtgcaagatggagggatacgccaacatggctgaagaaaaccaaaagcttttg
aagcagcagagcgttctcgaggacaaggttcaacagacgctagtagggaaaacgttaaat
caaacaattttcgatttattgacgtccaacgagacgaagctggccgataagttgcggaat
gatttcaagatgagtgacaaacgatacatgttcttccgcgtcaaagcattagccaaaact
cagaaatggcctgaaatcaagaaactggccaaacagaagcgacagcctctatccactgtt
tccatcgttcggttagttcgagaattcggtggtgacgcccaagcaaaagagttcctgaac
gacgaatttctcagtccaaatgaacgctttgatacctacgccgaatttggcatgtttttt
gaagctgcccaagctgcctttgttgctaaaagcttggaatccttgaatgcgttggaaacc
atgtccatgggtcgagacgacgtgattcgagccatttccaacttcaaaactcgtcttttg
acaaagtga
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