Tigriopus californicus (tidepool copepod): 131887131
Help
Entry
131887131 CDS
T09700
Name
(RefSeq) LOW QUALITY PROTEIN: squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131887131
03036 Chromosome and associated proteins [BR:
tcf03036
]
131887131
Spliceosome [BR:
tcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
131887131
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
131887131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
RRM_occluded
UTP6_C
RRM_3
LSM_int_assoc
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
131887131
NCBI-ProteinID:
XP_059091642
LinkDB
All DBs
Position
9:6837967..6841739
Genome browser
AA seq
970 aa
AA seq
DB search
MPCGSTIKQHREHCRSLFPQGTTHQHPRLNRKTNGDDTDNHCKVAPSTCAMTKPNQGVDM
KKPDASEEEEEEELEDHDDSPDEEVEDQLKEAKLADIERILQSDPYSYQAHLDHVDILKS
MGDLDRLRLARESFASHYPLAPPLWLAWIRDEQSLVSTSDERTRVMALFERATRDYASVD
VWLEFCQFTLGNIGSPEGIQMAREVFERAISSVGLHMAQGGLIWAAYREFESALVGLQSD
SEKPAQLKRIDDIFKRELAVPLLGMDQTMAEYETWSTVDFKGVVERHVVEKFKKAKIMMN
AREPMENEVLREKEDGHLDAYRRYLDFELKENHPPRIQCLFERRITDHCLEPIVWVEYLQ
XLNRTLKIDTVSLGVHERAIRNCPWSRELWVSYLRSLERYERPGPEIVKCFETALSAGLA
DVTHVWLVFLSFKRRALRFDQHEKKEDEEKDVQEMRQLFGKALEQVVTLGCDPTCRIARL
WTAMESDLFGSIDSARNIWSDIMAVVGAQAQFWLEFLTMEKTFGDTKHLRKLYPRALDKV
QDWPHLVGDLWIQFELEEGTLDQIELAETRVAERVKLIPCQKELDVNSSPVKVDKRKERD
RSKRREKRKNPTETPNNSQSGSSGPVVKKAKVEKEPASFKAPLPVSPSKLESNSPDRPVK
VINPPPGFKGEIKPPPGFKGDIKPPPGFNDQIAPPPGFEESSPAAPEKTDKTDKIARTVF
LSNLDFSVDEKRLYQIMSSSGKVVDVRLVKNYAGKSKGFAYVEFHSRSSAQEALARDNEL
LDGRPIFISEFNPGKDGHQFKYNTGLEKNKLFVKGFGTNITKEKLGDIFGEHGPIKEVRL
VTYRNGHSKGIAFVEYEKESDAQTALLKTDGTTIEDKEISVAISNPPERKGSQGQPSFAS
ETHVRSLGGGKKETGPRGRGRVQVAFVPRVVQNSSKNAANNSKADDLPSSKSNGSTVKSN
EDFRNLILKR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgcgggtcaaccattaaacaacatcgtgagcattgccgatctctcttcccccag
ggtaccacacaccaacacccgcgccttaaccgcaagaccaacggggacgacaccgacaac
cactgtaaagtcgccccatcaacttgcgccatgacgaaaccgaatcaaggcgtcgacatg
aaaaagcccgatgcctcggaagaggaggaggaagaagaactggaggaccacgatgactcg
cctgacgaagaggtcgaagaccaactaaaagaagccaaattagccgacatcgaacggatt
ttgcaatcggatccctatagctaccaagcccatctggaccatgtcgatattttaaaatca
atgggtgacttggaccggttgcggctcgcccgtgaatcctttgcctcgcattatccatta
gcgcccccattatggttggcttggatccgggacgaacaaagtctcgtgagcaccagcgac
gaacgaactcgggtcatggcacttttcgagcgagccactcgcgattacgcctccgtggac
gtgtggcttgaattttgccagtttaccttgggcaatatcggctcgccagaaggtattcaa
atggcccgtgaagtgtttgaacgagcgatatctagtgtgggtctccatatggcgcaaggt
ggcctgatctgggctgcttaccgcgaatttgaaagtgctttggttgggcttcaaagtgat
agcgagaaaccggctcaactgaaacgaatcgacgatatcttcaagcgtgaattagccgtc
cccctattgggcatggaccaaaccatggctgaatatgagacctggtccacggtcgatttc
aaaggggtggtggaacgtcatgtggtggaaaagtttaagaaggctaaaatcatgatgaat
gcacgagagcccatggagaatgaggttttacgcgagaaagaagacggtcatttggatgca
tatcgacgatatctggattttgagttgaaagagaatcatccacctcgaattcaatgtctg
ttcgaacgaaggatcacggatcactgtcttgaacccattgtgtgggttgagtatttgcag
taactaaatcgtactctgaaaatcgataccgtaagtcttggcgttcacgaacgagctata
cgaaattgcccttggtccagagagttgtgggttagctatttgcggtccttggagcgatat
gaacgccctgggccggaaatcgtgaaatgctttgaaactgccctctcggcagggctcgct
gatgtgactcatgtttggttggttttcctctcttttaagcgaagagcactcagatttgat
caacatgaaaagaaagaagatgaagaaaaagatgtccaagaaatgcgtcaactttttggc
aaggctttggaacaagtggtcactctaggttgcgatccaacctgtcgcattgcccggctt
tggaccgccatggaaagtgatttatttggctccattgactcagctcggaatatttggtcc
gatataatggctgtcgttggggcccaggctcaattttggctcgagtttctgaccatggag
aagacgttcggtgataccaaacacttgagaaagctctatccaagggctcttgataaagtc
caagactggcctcaccttgtcggggacttgtggattcaatttgaattagaagaaggaact
ctagatcaaattgaattggcggagactcgagtggccgagcgagtgaaattgatcccctgt
caaaaagagcttgatgtaaactcaagtccggttaaggtggataagcggaaagagcgcgat
agatccaagcgacgagaaaaacggaagaatccaactgaaaccccaaataactctcaatca
ggttcaagtggccccgtcgtgaaaaaagccaaggtagaaaaagaaccagcctcattcaaa
gctcctttgccggtgtctccgtcaaagcttgagagcaattccccagacagacctgtcaaa
gttatcaatcctccccctggctttaaaggcgaaatcaaacctcctcctgggttcaaagga
gatattaagcctcccccgggttttaacgatcagatcgctccacctcctggatttgaagag
tcgtctccggctgcaccagaaaagaccgataaaaccgacaaaattgccagaactgtgttt
cttagcaacctagacttttctgtcgacgaaaagcgattgtatcagatcatgtcgagctca
gggaaagttgtggatgtgcgtttggtgaaaaactatgcggggaagtccaaaggcttcgct
tacgtggaattccattctcggtcctctgctcaagaagctttagctcgcgataatgaactc
ctagacggccgacccattttcatctcagaattcaatccaggcaaagatggacaccaattc
aagtacaacacaggattggaaaagaacaagttgtttgttaaagggtttggaacgaacatt
accaaggagaaattgggggacatcttcggagagcatggtccaattaaggaagttcgtttg
gtaacctatcgcaatggccactccaaaggtattgcatttgtcgagtacgaaaaagaaagc
gatgctcagactgctctgctcaagacagacggtacaaccatcgaagacaaggagatctcc
gtagccatcagtaacccacctgaaagaaaaggaagccaaggtcaaccttcctttgcttcc
gaaacacacgtcaggtcattgggaggtgggaagaaggaaactggtccccgtggacgcgga
cgagttcaagtggctttcgttcctcgagtcgttcaaaattcatctaagaacgcggcaaat
aactccaaagcggacgatctgccttcgtcaaaaagtaatggctcaaccgtcaagtccaat
gaggattttcgaaatttaatactaaaacgataa
DBGET
integrated database retrieval system
