Tigriopus californicus (tidepool copepod): 131887176
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Entry
131887176 CDS
T09700
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131887176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcf03041
]
131887176
Spliceosome [BR:
tcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131887176
Complex C
U5 SnRNP specific factors
131887176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
131887176
NCBI-ProteinID:
XP_059091690
LinkDB
All DBs
Position
9:complement(9015551..9023342)
Genome browser
AA seq
2424 aa
AA seq
DB search
MAGLPPYGFGLPPGAPGGPPPGSGEWAQAMMAQQQAQLAAQAQAVAQAQAAQAAAFAQAM
HHHHQNAAVAAPSAGGPPPSGLSGPVLGPGGGGPAPPTPGAGKGGPRPSILSEDKLQEKA
RKWQQLQTKRYAEKRKFGFVDAQKEDMPPEHIRKIIRDHGDMSSRKYRHDKRVYLGALKY
IPHAVLKLLENMPMPWEQIRDVSVLYHITGAISFVNEIPWVIEPVYLAQWGSMWIMMRRE
KRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIEMDDEEDKAISEWFYDHKPLV
DSVHVNGTTYRKWNLALPQMACLYRMANQLLTDLVDDNYFYLFDLKSFFTAKALNIAIPG
GPKYEPLVKDAAVFDDDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNMPQYVHLSWYHTP
NVVYIKTEDPDLPAFYFDPLINPISHRHAVNSTQNDYLPDDDEEFELGEEVQPFLQDCPL
YSDNTANGISLLWAPRPFHMRSGRTRRALDVPLVKTWYREHCPAGQPVKVRVSYQKLLKY
YVLNALHHRPPKPQKKRYLFRSFKATKFFQSTSLDWVEVGLQVCRQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDSHVQYRLNNVDAFQ
LADGLQYIFAHVGQLTGMYRYKYKLMKQIRMCKDLKHVIYYRFNTGPVGKGPGCGFWAPG
WRVWLFFMRGVTPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDI
LDMMPEGIKQNKARTILQHLSEAFRCWKANIPWKVPGLPTPIENMILRYVKMKADWWTNT
AHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPEEAVAIYTTT
VHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDN
PHEALSRIKRHLLTQRVFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKR
KLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETADGECNVMMECKMEKLYEKIDLTLL
DRVLRLIVDHNIADYMTAKNNVVINYKDMNHSNSYGIIRGLQFSSFVVQYYGLINDLLIL
GLNRAAEMAGPPQMPNDFLTFQDVDTEISHPIRLYSRYVDKIHIYFRFSAEEARDLIQRY
LTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIEWESS
FVSVYSKDNPNLLFSMSGFECRILPKIRTTHEEFNHRDGVWNLQNEVTKERTAQCFLRVD
DDSMQKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCEN
KIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHF
RSGMSHEEDQLIPNLYRYIQPWEAEFIDSQRVWAEYALKRQEAAAQNRRLTLEDLEDSWD
RGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQVLKQNPFWWTHQRHDGKLWNLNNYRTD
MIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR
FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDL
CQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSRPSLLADSKDVMD
STTTTKFWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPCGVLVGIDLAYNLHS
AFGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFS
NQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRL
GQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPF
QACLKVEKFGDLILKATEPQMVLFNLYDDWLKNISSYTAFSRLILILRALHVNNDRTKIL
LKPDKTTITEPHHIWPSLSDDEWIKVEVALKDLILADYGKKNNVNVASLTQSEIRDIILG
MEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETQQFASKTEW
RVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNILKKFVMISDLRTQISGYLYGISP
PDNPQVKEIRCIVLPPQWGTHQTVHLPSMLPQHEYLKELEPLGWMHTQPNELPQLSPQDI
TTHAKVMSEHEEWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQNTDKGNNPKGYLP
SHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHEASMKYELSLRNPKEFYHEVHRPSH
FLNFASLEDEGADGNGADRDDLFA
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atggccggcttaccgccttacgggttcggtttgccgcccggggcacccggtggacctccg
cccggttctggcgagtgggcccaggctatgatggcccagcagcaggcccaactagcggcc
caagcccaagccgtggcacaggctcaagccgctcaagccgccgccttcgctcaagccatg
catcatcatcaccaaaatgcggccgtggccgcgccttcggccggtggaccaccgcctagt
ggcttgtccggccctgtcctcgggccgggcgggggtggcccggccccacccacgcccggt
gcggggaagggtggtcccagaccgtcgattttgagcgaagacaagttgcaggagaaggcc
cggaaatggcaacaattgcaaaccaagcgatatgcggaaaagcgcaagttcggattcgtg
gacgcccagaaggaggacatgccgcccgagcacatccgcaagatcatccgtgatcacggg
gacatgtcgagtcgcaagtatcgtcacgataagcgcgtctatttgggcgccctcaagtac
attccgcacgccgtgctcaaattgctggagaacatgcctatgccgtgggagcagatccgg
gatgtgtccgtgctctatcacatcacgggggccatctccttcgtcaacgagatcccttgg
gttattgagcccgtgtacttagcccagtggggctccatgtggatcatgatgcgacgcgag
aagcgggaccggcgacacttcaaacggatgcgattcccacctttcgatgatgaggagccg
cccttggattatgcggacaacgtcctggacgtggagccgcttgaggccattcaaatcgag
atggacgacgaggaagacaaggccatcagtgagtggttttacgatcacaagcctctggtg
gactcggtccacgtgaatggtaccacctatcgcaagtggaatctggctctgccccagatg
gcctgcttgtaccgcatggccaatcaattgctgacggatctggtggatgataactatttc
tatctctttgatctgaagtcgttcttcacagccaaggccttgaatatcgccattccgggc
ggacccaagtacgaaccgctggtcaaagatgcggctgtatttgatgacgattggaatgag
ttcaacgacatcaacaaaatcatcatacggcaaccaattcgaaccgagtatcggattgcc
tttccctacttgtacaacaacatgccgcaatacgttcatctgtcctggtatcacactccc
aatgtcgtgtacatcaagaccgaagatcctgacttgccggccttctatttcgatcctctg
atcaatccgatttcccatcgccacgcagtcaattccacccaaaatgactacctgcctgac
gatgatgaagaattcgagctaggcgaagaagttcagcctttcttgcaagattgtccgctc
tacagtgacaacacggccaatgggatctcgttgctttgggctccaaggccgtttcacatg
cgatctggccgcacacggcgggctttggacgttccattggtcaaaacctggtacagggaa
cattgtcccgctggacaacccgtgaaagttcgtgtgagctatcaaaaactcttgaagtac
tacgttctgaacgcccttcaccatcgcccacccaagccacagaagaaacggtacttgttc
cgatcgttcaaggctaccaagttcttccagtccacaagtttggattgggtggaagtgggt
cttcaagtgtgtcgacagggatacaacatgttgaacctcctcattcatcggaagaacttg
aactaccttcatttggattacaacttcaatttgaagccggttaagactctgaccaccaaa
gagagaaagaagtcgcgtttcggaaacgcctttcacctgtgtcgtgagatcttgcgcttg
accaaactcatcgtggattctcatgttcagtatcgtttgaacaacgtggatgcctttcaa
ttggcagacggtctccagtacatctttgctcacgtgggtcaattgaccggaatgtaccgc
tacaaatacaaactcatgaaacagattcgaatgtgcaaggatctcaagcatgtcatctac
tacagattcaacacgggaccggtgggaaaaggtcctggatgtggcttctgggccccggga
tggcgagtgtggctctttttcatgcgaggtgtcacaccccttttggagcgttggttggga
aacctcctctcccgtcagttcgagggtcgtcattcgaagggcgtggccaagacggtcacc
aagcagagggttgagtcccatttcgacttggagttgcgagcttcagtcatgcacgacatt
ttggacatgatgcccgaaggaatcaagcagaacaaggctcgaaccattcttcagcatctc
tccgaggctttccgttgctggaaggccaacatcccgtggaaagtgcccggtcttcccact
cccattgagaacatgattttgcggtacgtcaaaatgaaagctgactggtggaccaacact
gctcattacaatcgtgagcgaatccgtcgaggagccaccgtggacaagaccgtgtgcaaa
aagaacttgggacgactcactcgtctctacttgaaagctgagcaagaacgtcaacacaac
tatttgaaagacggaccctacatatcgcccgaagaagccgttgccatttataccaccacg
gttcattggctcgagtccagaagatttgcacccatccctttccctcccctatcctacaag
cacgacacaaagttgctcatcttggccttggaaagattgaaggaggcctattcggtcaaa
tcccgacttaatcagagccagcgagaggagctaggtctcatcgaacaggcctacgataat
cctcacgaagcgttatccagaatcaaacgtcacttgcttacccaacgtgtgtttaaggaa
gtgggcatcgagttcatggatctctattcccatttggtgcccgtgtatgatgtggagccc
cttgagaagattactgacgcctatttggatcaatatctgtggtacgaggccgacaagcgg
aaactctttccgccctggatcaagcctgccgacacggagccgcctccgcttctggtctac
aaatggtgtcaaggcatcaacaacctccaagacgtgtgggaaaccgccgatggtgaatgc
aacgtcatgatggaatgcaagatggagaagctctacgagaagatcgatttgacccttctg
gatcgagtccttcgattgattgtggatcacaacattgccgattacatgacggccaagaac
aacgtggtgatcaactacaaagacatgaaccattctaattcatacggaatcattcgagga
cttcagttctcttcttttgtggtccaatactacggattgatcaatgatctcctcattctg
ggcttgaacagagccgctgaaatggctggaccacctcaaatgcccaatgatttcttgacc
ttccaagacgtggacacggagatttcacatccaatccggctctattcccgctatgtcgac
aagattcatatctacttccgattctccgccgaggaagctcgtgatttgattcaacgatat
ctcaccgaacaccccgatccaaataatgagaatattgtgggctataacaacaagaaatgc
tggccccgagatgctcgaatgcgcctcatgaagcacgatgtcaatttgggacgagccgtt
ttctgggatatcaagaaccgcctccctcgctccgtgactaccatcgaatgggagtccagc
tttgtgtcggtttattcgaaggataatcccaacctcttgttctcaatgagcggtttcgag
tgccgaatcttgcccaagatccgaaccacccatgaggaattcaaccaccgagacggggtc
tggaatttgcagaacgaagtcaccaaggagagaacggctcaatgttttctccgagttgat
gatgactcaatgcagaagttccacaatcgtgtgagacagattctaatggcctcaggatcc
accacattcaccaagatcgtgaacaaatggaacaccgctctaattggtctgatgacctac
tttcgcgaagcagtagtgaatacccaagaattgctcgacttattggtcaaatgcgagaat
aagatccagacgcgcatcaagattggtctgaactcgaaaatgccctcgcgattcccacct
gtggttttttacacccccaaagagttgggtggcctgggcatgttgtccatgggccatgtt
ctcattccacagtcggatttgaggtggtccaagcagaccgatgtgggcatcacccatttc
agatcgggcatgagccatgaagaggatcagctcattcccaacttgtaccgatatattcaa
ccttgggaagcagagttcatcgactcacagcgcgtgtgggcggaatacgcgctaaaacgg
caagaagccgcggctcaaaatcgcagattgaccctggaggatttggaagactcttgggat
cgtggtataccccgaatcaacacgctcttccaaaaggaccgacacaccttggcttatgat
aaagggtggcgagtacgaacggagttcaaagcttatcaagtgttgaagcagaaccctttc
tggtggactcatcaacgacacgatggaaagttgtggaatctgaacaattaccgaaccgat
atgatccaagccttgggtggtgtggagggtatccttgagcacaccctgttcaaaggcacc
tatttccctacttgggagggtctgttctgggagaaagcttctgggttcgaggagtccatg
aaatacaagaaactcaccaatgcccaacgatctggcttgaatcagatccccaatcgaaga
ttcactctgtggtggtctccaaccatcaatcgcgccaatgtgtacgtgggtttccaagtc
caattggacttgacgggcatctttatgcacggcaagattcccaccctcaagatttcgttg
attcagatcttcagagctcatttgtggcagaaagtgcacgagtccgtcgtcatggacctg
tgtcaagtgttcgatcaagagctagatgccttggaaattgagaccgttcagaaagagact
attcatccccggaaatcatacaaaatgaactcgtcttgtgcggatattcttctgtttgct
gcatacaaatggaatgtgtctcggccttcgttattggccgactccaaggacgtcatggac
tccacgacaaccaccaagttctggttggacgttcaactcagatggggtgactacgattcc
cacgatgtggaacgttacgctcgggccaagttcctggattacaccacagacaacatgtcc
atctacccgagtccttgtggtgttttggttggtattgatttggcctacaacctgcattca
gcctttggtaattggtttccaggcagcaagccgctcattcaacaagccatggccaagatt
atgaaggccaatccggctttgtatgtcttgcgagagcggattcgtaaaggcctccagctg
tactcttcggaacccaccgagccttatctctcgtctcagaactacggagagctgttttcc
aatcagattatttggttcgtcgatgacacgaatgtgtaccgagtgacgattcacaagacc
ttcgaaggtaatttgaccaccaaacccatcaatggtgccattttcatcttcaatcccaga
actggacaactgttcctcaagatcattcacacatctgtgtgggccggacagaagcgtttg
ggacaattggccaagtggaaaaccgctgaagaagtggctgcccttattcgctccttgccc
gtggaggaacaacccaagcaaattatcgtcactcgaaagggcatgttggatcctcttgag
gtgcatttgctcgatttcccgaacatcgtgatcaagggttccgaattgcaattgcccttc
caagcctgtttgaaggtggaaaaattcggcgatttgattctcaaagccaccgaacctcaa
atggtgttattcaacctttacgacgattggctgaagaacatttcctcgtacacagccttc
tctagattgatcctcatcctccgggcgctccacgtgaacaatgaccgaaccaagatcctt
cttaaacctgacaagaccacgatcacggagcctcatcatatctggccctccctctcggac
gatgaatggatcaaagtggaggtggctctgaaggacttgattttagccgattacggcaag
aagaacaacgtcaacgtggccagtttgactcaatccgaaatcagggacatcattctcggt
atggaaatttctgctccaagtgctcagcgacaacagatcgcggagatcgaaaaacaaacc
aaggagcaatcccaactcacggccactaccacgcgaactgtgaacaagcatggtgacgag
atcatcacctcaacgacgagcaattacgagacccagcagtttgccagtaaaacggaatgg
cgagtgcgagccatttcggccacgaacctccatcttcgaaccaatcacatctacgtgtcg
tcagacgacatcaaagaaaccggatacacctacatcttgccgaaaaatattctcaagaag
tttgtcatgatctcggatcttcgaacgcaaatcagtgggtacctgtatggcatttctccc
cccgacaaccctcaggtgaaggagatccggtgcattgtgcttccgccgcaatggggaaca
catcaaactgtccacctgccgtccatgctgcctcagcacgaatatttgaaggaattggaa
ccattgggatggatgcacacgcagcccaacgagctgcctcaactctctccacaggatatc
accacacacgccaaggtcatgtccgaacatgaggaatgggatggcgagaagaccatcgtg
atcacttgctcatttaccccaggctcatgctcgctcaccgcttacaagctgacccccagt
gggtttgaatggggcaaacaaaacacggacaagggcaacaatccaaaaggttatttgcct
tcgcattatgagaaggtgcaaatgcttctctcagatcgattcctcgggttctttatggtt
cccagtcaagggtcgtggaactacaacttcatgggtgtgcgacacgaggcgagcatgaaa
tacgagctctccttgaggaaccctaaggagttctatcacgaagttcatcgtccatctcat
ttcctcaattttgcctctcttgaagacgagggtgcagatggaaatggcgccgatcgagat
gatttattcgcttag
DBGET
integrated database retrieval system
