Tigriopus californicus (tidepool copepod): 131887273
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Entry
131887273 CDS
T09700
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131887273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcf03019
]
131887273
Enzymes [BR:
tcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131887273
Messenger RNA biogenesis [BR:
tcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131887273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131887273
NCBI-ProteinID:
XP_059091815
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All DBs
Position
9:complement(4315792..4323983)
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AA seq
534 aa
AA seq
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MTEVVRENFKELLPVILGQISDASFVSFDAEFTTLGEFSLFDSLEQRYVKLRGQASSSVI
NQFGLSIFTQDPANPECYQVSCYNIYLFQRSFGPLNKPFLCEPQSLEFLTTHKFDFNKFI
YQGIGYTNRAQESMLRSYLAKNGARCGSFEREIYGDELKDVCSKVSQWISAQEKGQELDI
QCGNIPADLAAIYICFQFPNVWAFKSDDHEAQVRVKIVSSDERKELDKKQMETNLDEQRG
FSQVIEAIIKAKKPIVGHNCLLDLVRIYQQFIDDLPSTLERFRVKVRILFPEIYDTKLVA
LNIKKDQPNEFPVALTGTRLDELYLALNGQKAGYQVPHSPNIVMDKETGQIYGDGYKKFH
DAGFDAYVTGYVWLKLAHIASTIHYLSRDTIRTLKFKEHQAGVAPYKNHIKINHSSIFRL
DLDKPVKGATTGPAKVTISSKFGLAINPDQFINKLTSYGLVEVQPLTRTQVIVATMGQRT
CNAIIQDFANSEEYNVAPNNLRPEKMNKVTPILFGFVIGMILVPLCVVSRVMWR
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagttgttcgagagaattttaaggagttgcttccagtgattttgggccaaatt
tcggacgcttcgtttgtttcttttgacgcggaatttacgactctcggagaattcagcctc
tttgactccttggagcaacgatatgttaaactcagagggcaagcaagctcgagtgtcatt
aatcaatttggattgtccattttcacgcaagacccggccaatccagagtgttaccaggtg
tcctgctacaatatttatctcttccaacgttctttcggtcctttgaacaaacccttctta
tgtgagccccaatccctcgagttcctgaccacgcacaagttcgacttcaacaagttcatt
taccagggaattggctatacgaacagggctcaagaatccatgctccgttcgtacctggca
aagaatggagctcgttgtgggtcattcgagcgagaaatctacggggacgagctcaaagac
gtttgttccaaagtgtctcaatggatctctgcccaagaaaaaggccaagagctcgatatt
caatgtgggaacatcccagcggatttagctgccatttatatttgtttccagttcccaaat
gtttgggcctttaaatcggacgaccacgaggcgcaagtcagagtgaagatcgtctcgagt
gacgagcggaaagaactggataaaaagcaaatggaaaccaacctggacgagcaacgaggt
ttctcacaagtgattgaggctattataaaggccaaaaaaccaattgtggggcataactgt
ctacttgatttggtgaggatctatcagcaattcatcgacgatcttccctccactttggaa
cgctttcgagtcaaagttcgcatcctgttccctgaaatatacgacacgaagttagttgcc
ttgaacataaagaaagaccagccgaacgaattccctgttgcacttactggaacgaggctg
gatgagctttacttggccttgaatggacagaaggccggatatcaggtccctcactcgcct
aatattgtcatggacaaagaaactggtcaaatctacggagatgggtacaagaaatttcac
gacgccggattcgacgcgtacgtaaccggttatgtatggctaaaactggcgcacatcgcc
tcaacaattcattatctaagtcgggatacgatcagaaccttgaaatttaaagaacaccaa
gccggggttgctccttacaaaaaccacatcaaaatcaaccactcgagcattttccgcttg
gatcttgacaaaccggtgaaaggtgccacgaccggtccagctaaagtcacgatttcatca
aaattcggacttgccatcaaccccgatcagttcatcaataagctgacttcatatggatta
gtggaggtacagccgctcacccgaacgcaagtgattgtggccaccatgggacagcggaca
tgcaatgccatcattcaagatttcgccaatagtgaggagtacaacgtggcgccgaacaat
ctccgtcccgaaaagatgaataaggtgacaccaatcctctttgggtttgtgattggaatg
atcctcgttcccctctgcgttgtctctcgtgtgatgtggcgttga
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