Tigriopus californicus (tidepool copepod): 131887285
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Entry
131887285 CDS
T09700
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
131887285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131887285
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131887285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_VPS8_2
Clathrin
zf-RING_Vps41
TPR_Vps41
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
131887285
NCBI-ProteinID:
XP_059091837
LinkDB
All DBs
Position
9:complement(12418254..12423507)
Genome browser
AA seq
1415 aa
AA seq
DB search
METTTSLEALEAFEPLEDLDDEEFGLPAVGQLPSLADILGENPEVRDEDYEDEEEALNGG
LEAVDYGTPSHNGVWAVHNSSLLDSLSIMSRGSRNSDQSRSRTSNSSKMSRRQPPEKEKH
GSIMRHVILKGITSQMVSLADRVNVGIPTCMASTLYIAIGTSHGFILVFDSLQVLKWSLG
GAKYGQDYGSVSAIDFNIDSSRLLVGFAKGQLLEYDINAGKLTMVLNDAHPVSSPVIHAK
YTDDPNLALVSDAAGSIFEIQFKRPVGLRKFSSRCIFSGSRGEVVAVEPLSLVQYPEHRM
RNQIVVGVATISKVIVLALKPSLKVLFSCPLPGRTDTLPIISWQFVIIVTSDNQRVVDPV
VAFGRQSTIHFYQLSENLGGKTVFIPLRTLELTYEFLHFGWLNTKCMAIMDTSEGFHLED
VRNSDELESFDLADVRLIYGSSFFKGLATGENVSRAMSVAGDRAIYGSFKTYTNQLLLLG
RKSFHVLVIRTWNERLEHLVKNNRYIEALDLGCEFYQDTSKTLVGLKGPKDKKKTVIAQK
VLSIVLKYLDVCMTKNFPQEGNIGVLSDYFHDIVPPFVNTCMTLRRKDILFENVWNTFLL
DPFAKAKFLEGLEVYILSDQLKDLPVNVCQEFVSHYEIVKKYQELEACITHLHVSSLDIH
QVMNVCWTHGLYDAIIYIYNNGMLDYITPTEELMSQLRNIMSSLDNHGLSLKQTELGNKI
LVYISCCLAGRAYPYGDIPSDRLAQVKYDVYTCLTCLHSKKATDNEPSYPFLKTLLHFDT
QGLLNVISIAFEEPEFNTEMGRCQKQRMVDILLQIMVDGDEGYSPAQIGHLFTFLARQVA
KDGKTLSVSRDLFDKVLDVLTNQVETSHHEERQQALFELLDAGGLQYFDRNRLIEQCQRV
KFNRILEMLYESSQEYDLVLECYIHDEYRSIQAFAFIQRVLLSDDHYGDEAKGKVEKDVI
QNLEALIAIDPKKLAMVVYFHMYSYIPVVISRLESQRECLFRFLKFALEHKENGSQPASP
VHKANHASYVDPLTTKTTLMMFLELMCEFEPKMVASYLKTRSNYDHTAVLKVCEKYDILD
AMAHVLEQDGQIEEAFALLMKPLDSRLQEISNEDSPGEDLIWAQVNASVILLVQLCQRSA
SHLPGAKVEQLWFSILDSLLSRQRTIQNGKKIQGFKEVIKHVVNSTIGHLPLRSVIGKIL
QDPAYQSGSFGEIKGFLLEMLEMYHYEETLLKSTVELVQADVHTQVRQRHRAAQRGFFNQ
SLRCHLCRQHLARQGGNALIFQCRHAYHIPCLAGAGCVSVSKVGEEDWHCYSCITKNNSH
QISVGETSESSTKVSAVPEPLFQLDESELSNITDQKLVKARQYLEQMKAMQSPLATHEWL
GDSELSSREYIEENKSIFDRENFKLRLQPPIPEDI
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaccacctccttagaagccttagaggcttttgagcccttggaggatctggat
gatgaggaattcgggctgcctgctgtggggcaactcccttcattggcggacattttaggc
gagaatccggaagtgcgggatgaggattatgaagacgaagaagaggcgctcaacggggga
ctagaagctgtcgattatggcacgcctagtcataatggcgtctgggcggtgcacaatagt
tcactgctggattccttgtccatcatgtctcgtgggagtcggaattcggatcagagtcga
agtcggacctcgaattcgtcgaaaatgtcgcgaagacaacctccggaaaaggagaaacat
ggctccattatgagacatgtcatcttgaaaggcatcacgtctcaaatggtgtcgttggcg
gatcgagtgaatgtgggaattccgacttgcatggcctccactttgtacatcgccataggc
acctcgcatggtttcatcctggtttttgacagcttacaggttctgaaatggtcgctgggc
ggtgccaagtacggacaagattatggttctgtgtcagccattgactttaacattgattcc
tctcgtttgttggtgggcttcgccaaaggtcagcttctcgaatacgatatcaatgccggg
aaattgactatggtcttgaatgatgctcatcccgtgtcctcgcccgtgattcacgccaag
tacacggatgacccgaacttggccttggtcagtgatgccgccggatcgattttcgagatt
caattcaaacgcccggttggattgcggaaattctcgtcgaggtgcattttctccggcagt
cggggtgaagtggtggctgtggagcccctgtctttggttcaatatccggaacatcgcatg
cgaaaccagattgtagtgggcgtggctaccatctctaaagtgattgttttggcgctgaaa
cctagcttgaaagtcctattttcttgtccgttgcccggacgcaccgatacgttacccatc
atttcttggcagttcgttatcattgtcacctctgataatcagagagtggtcgatccggtg
gtggcattcggtcgtcaatcaaccattcatttctaccagctgtctgagaatttgggcggg
aagaccgtgtttattcctttgcggacattggaattgacttacgagttccttcatttcggc
tggctcaacacaaaatgcatggccattatggacacgagtgaagggttccatctcgaggac
gtgagaaattccgacgaattggagagcttcgatctggccgatgtgcgcctcatctacggc
tctagtttcttcaagggcttggccacgggcgaaaacgtcagtagagccatgtcagtggcc
ggggatcgcgccatctacggctcattcaagacctacaccaatcaactattgctcttaggt
cggaaatcctttcatgttctggtgattcgaacttggaatgaacgcttggagcatctggtc
aagaacaatcgttacattgaagccctggacttgggttgcgagttctatcaagatacgagc
aaaactttggtcggattaaaaggtccgaaggacaagaagaagactgtgatagctcagaaa
gtgcttagtattgttctcaagtacctcgatgtgtgcatgaccaaaaactttcctcaagaa
ggtaatatcggcgtgctctcggactacttccacgatattgtgcctccttttgtgaacacc
tgtatgacgctgaggcggaaagatattctctttgagaatgtatggaacacgttcttgttg
gatccttttgccaaggccaagttcctcgaaggactggaagtgtacatcctcagtgatcaa
ctgaaggatttgcccgtcaatgtctgtcaagaattcgtgtcgcattacgaaattgtgaaa
aagtaccaagagctcgaagcgtgtatcactcatctccacgtgtcttccttggacattcat
caagttatgaacgtgtgttggactcacggcttgtacgatgccatcatctatatttacaac
aatggcatgttggactacatcacacccacggaagagctgatgagtcaattacggaacatc
atgtcctcattggacaatcatgggttgtctttgaagcaaacagagctaggaaataaaatc
ttggtctacatatcctgctgcttggcagggcgagcttatccatatggagatatcccttca
gatcggctggcccaggtcaagtacgatgtctatacgtgtttgacatgtctccattccaag
aaggccacagacaacgaaccgtcctatccctttctgaagaccctactccatttcgacact
caaggactgttaaacgtgatatcgatagcctttgaagagcccgagttcaacaccgagatg
ggcaggtgtcagaagcagaggatggtggatatcctcctgcaaatcatggtggatggagac
gagggctattccccggcgcaaataggtcatttattcactttcttggcccgacaagtcgcc
aaggatgggaagaccttgtcagtgtcgagagatctctttgacaaggttttagatgtgctt
accaatcaagtggagacgtctcatcacgaggaaaggcagcaagctctctttgagctcttg
gatgccggaggtctccaatattttgatcgaaatcgtctgatcgaacaatgtcaacgggtg
aaattcaatcgcatcttggaaatgctctatgaatcgagtcaggagtacgatcttgtgcta
gagtgttacattcacgatgagtataggtcgatccaagcgttcgccttcattcaacgcgtt
ctgctaagtgatgatcactatggagacgaggccaaaggtaaagtagaaaaggacgtgatc
cagaatctggaggctctcatcgccatcgaccccaagaaattggccatggtggtgtacttc
cacatgtactcgtacattccagtggtgatatctagactagaatcccaaagagagtgtctc
ttccgcttcctgaagtttgctttggagcacaaagaaaatggatcccagccagcttctccc
gttcataaggcaaatcatgcctcttacgtggatcccctcactactaaaaccactctgatg
atgttcctcgagctgatgtgtgaattcgagcccaaaatggtggcctcgtacttaaagact
cgctccaattacgaccataccgctgtgctaaaggtttgtgagaagtatgacatcttggat
gccatggcccatgtccttgagcaagacggtcaaattgaggaagcctttgcattactcatg
aagccgctcgactcccgacttcaagagatctcaaacgaggatagtcctggtgaggatctg
atctgggctcaagtcaatgcttcggtaattttgctcgtccaattatgtcaaagaagcgct
tcacatttgcccggagcgaaagttgagcagttatggttcagtatcttggattcgctcctg
agtaggcagcgaacgatccaaaacggaaagaaaatccaaggattcaaagaagtgatcaaa
cacgtggtgaatagtacaatcggccatctacctctcagatctgtcatcggaaagatccta
caagatcctgcttatcaatccgggagctttggcgagattaagggctttctgttggaaatg
cttgagatgtatcattacgaagagaccctcctcaaatccacggtggaactggttcaagct
gatgttcatactcaagtacggcaaagacatcgtgcggcccaacgtggctttttcaatcaa
agccttcgttgtcatttgtgtcggcagcatttggcgcggcaaggtggcaacgccttgata
ttccaatgtaggcacgcctatcacataccgtgcttagcgggtgcgggctgtgtgagtgtc
agtaaagtgggcgaggaggactggcattgctactcgtgcatcacgaagaacaattcgcac
cagatcagtgtgggtgaaacatccgaatcttcaacgaaggtctctgctgttccggagcct
ttgttccaattggacgagagtgagctgagcaacattacagaccagaagctcgtcaaagcc
cgccaatatctcgaacaaatgaaggccatgcaatcgcccttggccactcatgaatggctg
ggtgattctgagctatcttcccgtgaatacatagaagaaaacaagtcgatatttgatcgg
gagaatttcaaactccggctacaaccgcccattccagaagacatctag
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integrated database retrieval system
