Tigriopus californicus (tidepool copepod): 131887657
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Entry
131887657 CDS
T09700
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04140
Autophagy - animal
tcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
131887657
04148 Efferocytosis
131887657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131887657
Membrane trafficking [BR:
tcf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131887657
Hops complex
131887657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
zf-rbx1
zf-C3H2C3
zf-C3HC4_2
zf-RING_2
TPR_Vps41
zf-ANAPC11
zf-C3HC4
zf-RING-like
TPR_11
HTH_13
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
131887657
NCBI-ProteinID:
XP_059092282
LinkDB
All DBs
Position
10:10015612..10019362
Genome browser
AA seq
1080 aa
AA seq
DB search
MTFFQWKRFNFFEIAKDTDGGAIQDVLKDSRVLCSTAGRGLIILGDSNGCLHFLNRHLEA
QTLSAFPLEVLLVQQVRQSGLLLALGLEERHTNPVLRVYHLDILDKLGQPSLLRHSRVGL
PPRVSQPTCLAAHDNQALLAVGFQDGILMLYRGEITRERGTKSKVLMDGQGSLTGCFFRN
VGPQILLYVTTKSGVFTIDVTTKDKEYKSTLDSIGCPLGTVVASDNLPETHMVTARDDGV
YCYNPEGRGQCYAFDGRKTLVHWFRTYLVVVTEDSTPAMRQSVNVKEPIRKQILTIFDVQ
NKFVAFTAPIKPVTALVSDWGLLFALTEDNRLCQLTEKDIQTKLDMLFRKNFYDVAVKVA
KSQHYDEEGLIDIFRQYGDHLYSKNDLTGAVENYSKTIGHLDPSYVIRKFLDTSKTIFLT
EYLQALHSKNLANEDHTTLLLNCYTKLKDKAKLDEFVLKDQDNLDFDVDIAIRVCRQAGY
HKHAIQLAKRHHRHELYLKMQIEDLEEYGEALDHIADLDFPEAERSMKRYGNFLMRHLPS
ETTSLLQILCTDYRPKNQCMVTESMLQGAPDGSPTASPAENFIHLFVQHSEKMVEFLEYV
LKYQARLAGEGAYNTLLEHYLHQYSRASESHEVDRASLYEEQILRILKSETADYDHDQAL
ILCQLHSCRRGLLQLYTKKELYHEILKNHVEYGEFSQALQTCRQFGSERPELWTDALKYV
ASDCEVDAKFVNEVLETIEQKKLMSPLMVIKQLSNSPRATLGMVREFLLRVVQAEDAQLS
QDKVVVEQYRDDSVKLRHKLEGLQTKATVFQASTCSACSHPLELPSVHFLCEHSYHQHCF
QSYSETETDCPSCYPENKKVLDIIKSQEKSRDQHDLFHHQLNNADDSFSVIAEYFGRGVF
RPTVTLENETSIPPVPQIPQNERVSTVIASEARQRINEGVRSTDSKRALQSEGRLRSEDK
SMVKDPALRQTEGQLRRNQGSSAQRGIPTSDARLRQAEGGRTTSTLFGAWSGSPKVTKSK
TPSPKNISGTSKNPFGNASDDEDLGAGNPFSESNIPSSASSKNPFGDPDYDEGLNPFGTS
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttttccaatggaaacgcttcaacttctttgagatcgccaaagacacggacggt
ggagctatccaagatgtcttgaaggacagccgggtgctgtgcagcacggcggggcgtgga
cttatcatcttgggcgactccaacgggtgtttgcactttctcaatcgccatctggaggcg
caaactctctccgcctttcccctagaggtgctactggtccaacaagtccgccaatccgga
ctgctgttggccttgggtcttgaagaacgtcacaccaaccctgtgctgcgcgtctatcac
ttggatattctggacaaactggggcagccgtccttgttaagacatagccgggtgggtcta
ccgccacgggtatcccagcccacctgtttggccgcccacgataaccaagcccttttagcc
gtcggattccaggatggcattctcatgctctatcggggcgagatcacccgagagcgcggg
accaaaagtaaggttctcatggacgggcaaggttcgttgaccggttgcttctttcgcaat
gtgggcccccaaatactattgtacgtcaccaccaagtccggagtgttcacgatcgacgtc
accaccaaggacaaggaatacaagtcaacccttgactcgattggttgtcctctcggtacg
gttgtggcctcagataacctacccgaaacacatatggttactgcacgggatgacggcgtg
tattgttacaatcccgaaggtcgtggccaatgctacgccttcgatgggcgaaaaacattg
gtccattggttccggacgtatttggtggtggtcaccgaagactcgacgcctgccatgcgt
caaagtgtgaacgtaaaggagcccattcgcaagcagatcctcaccattttcgacgttcaa
aataagtttgttgccttcacggcccccattaagccggtgacggccttggtgtcggactgg
ggcttactctttgccttgacggaagataatcgtttgtgccagttgaccgagaaggatatt
cagaccaagttggatatgttgtttcggaagaacttttacgacgtggctgtgaaggtggcc
aaatctcagcattacgatgaagaaggactgattgacatctttcgacagtatggagatcac
ctgtactcgaagaatgatttaacgggtgcagtcgaaaactactccaagactattggtcac
ttggatccttcgtacgtgatcagaaaattcttggatacgtccaagacaatcttcctgacc
gaatatcttcaggccctgcactctaagaatttggccaatgaagaccacaccactttgtta
ctgaattgctacaccaagctgaaagacaaggccaaattggatgaattcgttttgaaggac
caagataatctggactttgatgtggacattgccattcgcgtctgtcgccaagcgggatat
cataaacacgccattcagttagccaaacgccatcaccgtcacgaattgtacttgaagatg
cagatcgaggacctcgaagagtatggcgaagcgctcgatcacattgccgatttagatttt
cctgaagccgagcgaagcatgaagcggtacggcaacttcctgatgcgccatctgcccagc
gaaaccaccagccttttgcagatcctttgcaccgattatcgacccaagaaccaatgtatg
gtcaccgaaagtatgctacaaggtgcacccgatggctcgcccacagcctcacccgctgaa
aattttattcacctatttgtgcagcattctgagaagatggtggaatttctcgagtacgtc
ctgaaataccaagccagattggcgggtgaaggggcctataacaccctgcttgagcattac
cttcatcaatacagtcgcgcctcggagagccatgaggtagacagggccagtttgtacgaa
gagcagatccttcgaattttaaaaagtgaaactgccgattatgaccacgatcaagcttta
attttgtgccaacttcactcctgtcgacgcggtcttcttcaactatacacgaagaaggaa
ctctatcacgagatcctaaagaaccatgtggaatatggcgaattctctcaagccttgcag
acatgtcggcaattcggctcggagcgcccggagctctggacggatgcattgaagtacgtt
gcttcagattgcgaggtggatgcgaagttcgtcaatgaggtgctcgagaccattgagcaa
aagaaactaatgtcacccttgatggtgatcaagcaattatctaactcacctcgagccact
ttgggaatggtgcgagagttccttcttcgagtcgtccaagctgaagacgctcaattgtct
caggataaggttgtggtcgagcaatatcgagacgacagtgttaaattacgccataagttg
gaaggtcttcaaaccaaggccaccgtgtttcaagcctccacgtgcagtgcttgttcgcat
cccttggagcttcctagcgtgcatttcttgtgcgagcattcctaccatcagcattgtttt
caatcctactcagagaccgaaacagattgtccttcgtgctaccccgagaataaaaaggtc
ttggacataatcaagtcccaggaaaagagccgagatcaacacgacttgtttcaccatcag
ttgaacaacgccgacgatagtttctcggtgatcgcggaatactttggacggggcgttttt
cgccctaccgtgaccctagaaaatgagacatccattccacccgtccctcagattcctcag
aatgagagggtttccacggtcatagccagtgaggctcgtcagaggatcaatgaaggtgtt
cggtccacagactcgaagcgagccttgcaatcagaagggcgtcttcgctcagaggataaa
tctatggtgaaagatccagcattgcggcagacggagggtcagctgagaagaaaccaagga
tccagtgctcaaagaggcattccgacctcggatgcacgattacgacaagcagagggagga
cgaacaacatccactttgtttggcgcttggtcgggttcgcctaaagtgacgaaaagcaag
actccctcgcccaaaaatatttcagggacatcgaaaaacccatttggcaacgcgagtgac
gacgaggacctcggagcagggaatccgttctcggagagcaacattccatccagtgcatcc
tcgaaaaatccatttggcgatccggattacgatgagggccttaatccctttggtactagt
taa
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