Tigriopus californicus (tidepool copepod): 131887813
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Entry
131887813 CDS
T09700
Name
(RefSeq) DNA excision repair protein ERCC-6-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
131887813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcf03036
]
131887813
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131887813
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
131887813
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
131887813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
131887813
NCBI-ProteinID:
XP_059092509
LinkDB
All DBs
Position
10:8144401..8148574
Genome browser
AA seq
1270 aa
AA seq
DB search
MNRVNPSNPDAGGSSSSSSSSSIISMSVMPQRRPEQEGDEAEDASALEQLSIRAYDQDQL
EAEVFRQADQALEQQERQRQTEICLKELRPVILELQSLRQSLGKLELELKRLYGSNATWN
RAQQRKAQSCLDEQEKLIVLRNTLRNKQKQLAQDLTHLKYDWALDSDFQLVQDDDGNNHE
DDVSADGSRLAANETQPESIFAPENQAETDQEKKIRLGEMTAFGNVLQTKTDSNELSHYN
TYVADQRRLNAQIAVDSVSKSSKAVSVGRKGQDRSRIRSRTVSSDEDESEAPPAYGTDDS
DWAGTDDEADDDRKKRKRGLVDDGERADYLKRLDKWQSSHEADELNAKSEELEGGLHVPS
RIWDQLYNYQRVCVQWLWELHQQKVGGILGDEMGLGKTIQIIAFLASLSFSQRRIGSGNS
FGPILIVCPTTVMHQWVKEFHKWWPMFRVAVLHESGSHTGSRQSLIRSVVASKGVLITSF
NGVVAFNDALVQGNFDYVILDEGHKIRNPDAKITLTVKTFPTSHRIILSGSPLQNNLKEL
WSLFDFIYPGKLGTLPVFMQQFSVPITQGGYSNASRVQVATAYKCATVLRDTINPYLLRR
MKSDVKQHINLPEKNEQVLFCKMTDQQRDIYREYLDSGEIKSILDGRLQIFVGLINLRKI
CNHPDLYDGGPRNFGPNQIVTGEDDEEFGYWKRSGKMIVIEALLKLWKKQGHRVLLFSQS
RQMLNILERFVRDRDYQYMKLDGTTAIGSRQTMIDKFNNSKDVFVFLLTTKVGGLGVNLT
GASRVVIFDPDWNPSTDTQARERAWRIGQEKQVTIYRLMTAGTIEEKIYHRQIFKQFLVN
RVLKDPKQKRFFKSNDLYELFTLNEGTSDKTETSAIFAGTGSDVKIKKSDRKSRKTQSSE
GRSPSMPLALPIKRVDSLKQFDVKSSLKRIYDNAEDASNIENDDEEKKRLLERVRKISRK
IASEDFSLSSSSTTSPKPNQINSSSSSSRTRKSQKSRRPEKESKKRRIDGEKISHLVKSG
TYQAPKDDPEEVEKNSAEQDNYVLSKLFKKSGVHSAVQHDAIIDGEGDDYVLIEGEAEKV
AKEAVESLRLSRRQCFRAEAGVPTWTGSHGSVATKPRFGKKSRNSNPSSSTALKSNKLFS
GEGTKIPEVQNLLTSADLLAKMKERNRFLPSDHDNDSNQDNLFQPDHGRRNSPKNEEQEK
QLELLADIRNFIAFQAKIDGQAQTYELLERFKTRLPPQQSPLFKALLKQICHFSRDSDGR
GIWSLKTEFA
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgagttaatccaagcaatcctgatgctggagggtcctcgtcctcgtcctcgtcc
tcgtccataatatctatgtcagtgatgccccagcgaaggcccgaacaggagggcgacgag
gctgaggatgccagtgccttggagcaattgtccatccgggcttacgaccaagatcaactg
gaggccgaagtgttccgccaagccgatcaagccctcgagcaacaagagcgccaacggcag
accgagatttgcctgaaagagctcagacccgtgatccttgagctccaaagcttaaggcaa
tcgctcgggaagttggagctcgagctcaagcgcttatatggttccaatgccacgtggaac
agagctcagcagagaaaggctcaatcctgtctggacgagcaggagaaattgattgtcctc
cggaacaccctccggaacaaacagaagcaacttgctcaggatttgacacacttgaagtac
gattgggctttggattcagattttcaattagtccaggatgatgatgggaacaatcacgag
gacgatgtctcggcggacggatccaggctggccgcaaacgaaactcaacccgagagtatt
tttgcccccgagaatcaagcggaaacggaccaagagaaaaagattcgattgggcgagatg
acggcctttggtaacgttcttcagaccaagaccgactcaaatgagttgtcacattacaac
acgtatgtggcggatcagcggcggttgaatgcccaaatcgctgtggattccgtctccaag
tcgtccaaggctgtctccgtggggcggaaaggccaagaccgatctcgcattcgatccaga
actgtgtcatccgacgaagatgaaagtgaggccccgccggcgtacggcacggatgactcc
gattgggcgggtacggatgatgaagccgatgatgatcgtaagaaacggaaaagaggcctg
gtcgacgacggagaacgagcagactatttaaagcgactcgacaaatggcaatcgtcgcat
gaagcggacgaattgaatgccaagtccgaggagctagagggcggactccacgtacccagt
cgtatctgggatcagttatataactatcaacgggtttgtgttcagtggttgtgggagctt
catcagcagaaggtgggaggcatcttgggcgatgagatgggtttgggcaaaaccattcaa
atcatcgcgtttcttgctagcctcagcttcagtcaacgacgaataggcagtggtaatagc
tttggccccatcctcattgtatgtccgacaacagtcatgcatcaatgggtaaaagagttc
cacaagtggtggccaatgtttcgggtggccgtccttcacgaatccggatcgcacacggga
tctcgtcaaagtcttattcgctcggtggtcgcatcaaaaggagtactcattactagtttc
aatggtgttgtggctttcaatgacgccctcgttcaaggtaactttgactacgtcatcttg
gacgaggggcacaagattcgaaatccagatgccaagataaccctcactgtcaaaacattt
cctacctctcaccgaatcatcttgtcgggctctcctctacagaacaatttgaaagagctt
tggtctctttttgacttcatctaccccggaaaacttggaactctgcccgtgttcatgcaa
caattttccgttccgatcactcaaggaggttattcgaatgctagccgcgttcaagtggcc
actgcctacaaatgtgccactgttttgagagataccatcaatccgtatcttttgcgccga
atgaaatcggatgttaagcagcacatcaatttgcctgaaaagaatgaacaggtgctcttc
tgtaaaatgacagaccagcaaagagacatttaccgagagtatctagattcgggtgaaatc
aaaagcattctcgacgggcgtcttcaaatcttcgtgggactgataaacctcagaaagatc
tgtaatcatcccgacctctacgatgggggtccaagaaatttcggtcccaaccaaatcgtt
acgggtgaagacgatgaagaatttggatactggaagagatcaggaaaaatgatcgtgata
gaagccctcttgaaactgtggaagaagcaaggtcatcgcgtactacttttcagtcaatcc
cgtcagatgttaaatatcctagagcgatttgttcgcgatcgagattaccaatatatgaag
ttggacgggacgacagcaattggatccaggcaaaccatgatcgacaagttcaacaattcc
aaagacgtgttcgtttttctcctcactacgaaggttggtgggttgggggtgaacctcacc
ggggccagccgagttgtaatcttcgatccggattggaacccttccactgacacccaagca
cgagaacgagcttggcgtatcggtcaagagaagcaagtgaccatctacaggctcatgact
gcgggcactatcgaggaaaaaatctaccatcgccagatttttaagcagtttttggtcaat
cgtgttcttaaagatcccaaacaaaaacgtttttttaagtcgaacgatctatacgagttg
ttcacattgaacgagggaacctcggacaaaactgagaccagcgccatttttgccggcaca
ggctcagacgtcaaaataaagaaaagcgaccgcaaatcgaggaagacccagtcaagtgaa
ggcagaagcccttcgatgcctttggcattacctattaaacgtgtagattccttaaagcaa
tttgatgtgaaatcctccttgaaacgcatctatgataacgcagaggatgccagcaatatt
gaaaacgatgacgaggagaagaaaaggttattggaaagggttcgaaaaatcagtcgaaaa
attgcctcagaggatttttcactatcctcgtcctcaacgacatctccaaaaccaaatcaa
attaatagctcctcttcatcctcgaggactcgcaaatctcaaaaaagtcgacgtccagag
aaagaatccaagaaaaggcgaattgatggcgagaaaatttcccatttggtcaaatccggt
acctatcaagcacccaaagatgatccagaagaagtagaaaagaactcagccgaacaagac
aactatgtgctttccaaacttttcaagaaatcgggagtacactcagctgtccaacatgat
gccatcatcgatggagagggcgatgattacgttctgatagaaggcgaggccgaaaaagtc
gccaaagaagcagttgaaagtctcagactctccagaaggcaatgtttccgagctgaagcc
ggagtgcctacatggactggctctcacggatctgtagccacaaaaccccgattcggcaag
aagtccaggaactccaacccctccagctcaaccgccctcaagtccaacaaactcttttcg
ggagaaggaaccaagataccggaagtccaaaaccttttgacgtctgcagatctgctggcg
aaaatgaaggagcgaaaccggttccttccctccgatcatgacaatgactccaatcaggac
aatttgtttcagccagatcatggacgtcggaattctcccaaaaacgaagagcaggagaag
cagcttgagcttctggccgatatacgtaactttattgcatttcaagctaaaattgacggc
caagcacagacttacgaactcttggaacggttcaagactcgactccctcctcaacagagc
cctttgtttaaggctttgttaaaacagatttgtcatttctcccgggatagcgatggtcgc
ggtatatggtcgctaaagactgaatttgcttaa
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integrated database retrieval system
