KEGG   Tigriopus californicus (tidepool copepod): 131887881
Entry
131887881         CDS       T09700                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
tcf  Tigriopus californicus (tidepool copepod)
Pathway
tcf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    131887881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcf03019]
    131887881
   03041 Spliceosome [BR:tcf03041]
    131887881
Messenger RNA biogenesis [BR:tcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     131887881
Spliceosome [BR:tcf03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    131887881
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_EIPR1 EIF3I WD_LRWD1 Beta-prop_Vps41 Beta-prop_EML Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C PQQ_3 Beta-prop_DCAF12 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 131887881
NCBI-ProteinID: XP_059092585
LinkDB
Position
10:complement(6710911..6712794)
AA seq 352 aa
MSPALSSVEMVAEYTSLFAQCFSPDGQLLAVGNHLGKIVIYSLEQIVQRSRGEVVTDETP
TQAAQLSSTSSYFCQFWAKETKKPILSLISNPDHLIIGTQGEISGWTWAGIRKKSPKQAW
SLPLPRQPGTAIETDANYLALNSSPQTAGHLIVAGGDHHVHVYDLETRLSVMDLRGHSNY
VHSVSHCPQSNMIASASEDGSVRLWDVRRKNSNTSTLVPSDKEPLCRPSLGKWMGAVSLN
SDWLACGGGPRAAVWHLRTMSPNEALPPDENGVHEIKIQGDRVLIGGQMNMLYQANLSGE
VQSVVPVSSSCIYSIICQEAPIRILTCSGSSSKIDVCAPNFSYKDQTIAFPI
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgtctcccgccttgtccagtgtggaaatggtggcagagtacacctctctttttgctcaa
tgcttctcacccgatggacaactcctggccgtgggcaatcatcttggcaaaatcgtcatc
tactccttggagcaaatcgtccaaaggtcccgaggtgaggtggtgaccgacgaaacgccc
actcaagcggcccaattgagctccacgtccagttatttctgccaattctgggccaaagaa
accaaaaaaccaatcttgtctttgatatcgaacccggatcatttgatcattggcactcaa
ggagagatcagtggttggacatgggcgggtatcaggaagaaatcccccaaacaagcttgg
tcgctgcccttgcctcgacaacccggaacggccattgagacggatgccaattatttggct
ctgaactcgtcacctcaaacagccggacatctcatcgtggcgggcggtgatcatcacgtc
cacgtatatgatctcgagacgcgtctctcggtgatggatctccgtgggcacagtaattat
gtccacagcgtatcgcattgtccgcagagcaacatgattgcgagtgccagtgaggatggc
tccgttcgtttatgggatgttcgtcgaaagaattccaacacgtcgactttggtacccagt
gacaaggagccattgtgtcgtccatctctgggcaagtggatgggagctgtgagtctaaac
tcagactggctggcttgcggtggcggaccccgcgcagccgtgtggcatttgcgtaccatg
tcgccgaacgaggccctacccccggatgaaaatggcgtgcacgagatcaagattcagggc
gatcgcgtgctcatcggtgggcaaatgaacatgttgtatcaagccaatctcagcggtgaa
gttcaatctgtggtgcccgtttcaagtagctgtatttactcaatcatttgccaagaggca
cccattcgaattctgacttgctccggatccagctcgaaaattgacgtctgcgcacccaac
ttcagttacaaagaccaaaccatcgcatttccaatctag

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