Tigriopus californicus (tidepool copepod): 131887899
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Entry
131887899 CDS
T09700
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131887899
03036 Chromosome and associated proteins [BR:
tcf03036
]
131887899
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
131887899
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
131887899
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
Tex_central_region
SH2
S1
HHH_9
Tex_YqgF
HHH_3
S1_RRP5
Tex_N
DUF2924
Motif
Other DBs
NCBI-GeneID:
131887899
NCBI-ProteinID:
XP_059092610
LinkDB
All DBs
Position
10:complement(10653079..10659644)
Genome browser
AA seq
1820 aa
AA seq
DB search
MSDFVDNEAMVSDDEDMASEAGGSGAASVASGSRSPSRSRSGSARSGSDENEDDENPTQS
KSGSSGSGLKKKKSAVISSDEDDEDEDEDEEKAKEEMKGFIADDDEEEDDGSDSDGVRKS
SSGRNSRHKHRRRRSRSRSRSRSDEDIDEEDMELLQENLGFKFKKNRKRIKIDDASDDDE
GPADSRSNDELPDIDQASRGGMDDGDGYESEDVDDFIVGDDGQPIKRDRKKKKQHLFNDS
ARQMAEDIFGVAFDYDEFEQYGEEDYESEDEDLDEDDEDLDRPRRKKDRKKKATKTIFDL
YEPRELELRHFTKEDDDIRNNDIPERMQLRATPVTSVPPDSDELDREAEWIFKYGFAKPG
VSMQTHFSRSDCENWARQPGTVEKIKKALDFMRQQFLEVPFIAFYRKEYVQPELKINDLW
RVYNMDELWCKLQTRKRNLRNLMIKMQAFQGDTIMADPEAPLSDDVKLISNEDIEKVEQV
ETFEEYKDRDQHFKLYYGRDIEIMQEAMKRRKKEDKLNKKHRKKEKKRKTKTITNEDGED
VEVTDDEAISEPEEEEPEIVEPDDNMDEDVEALKQAKRHDAFSLCKKYKITGIAQKFGLT
AEQFGHNLHDGYQRFDVEQEANEPLEVAAEFKNDKISNPQDILEAAKHLVATQIARDPLV
RKVTRDAFFERATITARPTKKGIKDIDEDHECYAMKYLKDKPVRDLKDDQWIRLTQAEEQ
KIMTIELGQDLCSVMGNKTFLEEAKELFKYDAYSKSVQEWNNLRGQCVEIAFKRMLFPML
RKELRLKLNKEAKDGIIHACRNKLYDWIKVGRYSVTFEDEDEDDWDSTHGCRVMAVMYND
DPDVASYAVSLSTEGEVVDILKLDHLLKRKNSWKEKESQEKISDLKALKGFIHSKRPHCI
VVGAVDRNAVGIKMDLEDVIKDLVDGEAQFPNVGVFLMDDHLAKVFANSQRAEQDFRDYP
EVLREAVSMARRMQDPLTEFAQLTGPENEILCLRYHKYQDLLSEDELLEALNVEFINRTN
EVGVDINECVAHTYMGNLVQFVGGLGPRKAAALLKTLRQLQSSQRLENRQQLVTLCHMGP
KVLINCAGFIKIDTSSLGDSEVYVEVLDGSRIHNEAYEWARKMAVDALEYDEEDGNPANA
LEEILQEPEKLAELDLEAFAQELERQGFGKKSITLQDIRAELTHMYKDLRDAYTPPNSEE
IFNMITKETPQTFFIGKLLQAQVFSFAYKKPQGEELDQAAPVKGDQNLWRCPFCGQDDFP
ELTEVWNHLDADNCPGKAVGVKVRLDNGLTGFIPMKNLSDSNVLNPEERVRKGQNIFCRI
TKIQPERFSVECVCKSSALLDKENEWKPRLDDYYDKRAEGADSEEETKKKEQKQRQTYIK
RVIVHPSFYNISFKDAEKLMVNMDQGDVIIRPSSKGEDHLTVTWKVGDDIYQHIDVREEG
KDNAFSLGRSLWIGNEEFEDLDEIIARHVNPMAAHARDILTFKYYKDTDGGKREKAEEIL
KVDKRAAPTKIHYFLSASKEFPGKFMLSYLPRTKARHEYVTVTPDGFRFRHQNFDSLSSL
MKWFKEHFRDPIPGTPGRSTSRTPYNMAGTPGGGITPGAMSLAAGTPFNPTPGFGNNAST
PYTPSGQTPFMTPHQTPGAFVTPRHTPRSGIPVGGPPHRSSGNTPQGGTPRSGRQPPMPR
QGMPPPHGGGYTPGRGPPHGTPSGTPGGRRPAPYPSPSGGYGSGGYSRGQSPATGHPPRG
GRDQDAWATAGDAWAKGGRRTPANTTPRGYTGSTTPRFDEASNRTPRYEDSTQNQRTPRQ
GGSGTRTPRGGVDSTPLYDE
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttcgtggataacgaggccatggtgagcgatgacgaggacatggcctcggaa
gcggggggcagtggggcggcttcggtggcctctggctcgcgatccccgtcccgctcccga
tccggctcggcgcgttccggctcggatgaaaacgaggacgacgagaaccccacccaatcg
aaatccgggtccagcggcagcgggcttaagaagaagaaatcggccgtgatctcatcggat
gaagatgacgaggatgaggacgaggatgaagagaaggccaaggaggagatgaaaggattc
atcgcggatgatgatgaagaagaggacgacggctcggactcggatggggttcgcaagagt
agtagtggccggaacagtcgccacaagcaccgaaggcggcgctctcgctcgcggtctcgc
tcgcggtctgacgaagacatcgatgaagaagatatggaactgttgcaagagaacttgggg
ttcaagttcaagaagaaccgtaagcgtatcaagattgacgatgcttccgacgatgacgaa
ggtccagcggattctcgcagtaacgatgagttgcccgatatcgaccaagcgtctcgaggc
gggatggacgatggtgacgggtacgaatccgaagacgtcgatgatttcatcgtgggtgat
gacggacagcccattaaacgcgatcggaaaaagaaaaagcagcatctcttcaacgattca
gcccgccaaatggctgaagatatcttcggcgtggccttcgactatgacgagttcgagcaa
tatggcgaggaagactacgagtccgaagatgaagacctcgacgaggatgacgaggatttg
gatcgacctcggcgaaagaaagatcgcaagaagaaagccacgaagaccatcttcgatctc
tacgagccacgcgagcttgagttgcgccatttcaccaaagaggacgacgacatccgaaac
aatgatatccccgagcgaatgcaactccgtgccacgcccgtcacctccgtacctcccgat
tctgacgagttggatcgagaagctgagtggatcttcaagtacgggttcgccaagcccggt
gtctcgatgcagactcacttttctcgcagtgattgcgagaattgggctcgacagcccggt
accgtggagaagattaagaaagccctcgacttcatgcgccaacagttcctagaagtgcct
ttcatcgccttctatcgcaaggagtatgtgcaacccgagctcaagatcaacgacttgtgg
cgcgtttacaacatggatgagctctggtgcaaactccagactcgaaagcggaatcttcgt
aacctcatgatcaagatgcaagccttccagggtgatactatcatggctgatcctgaagct
cccctctccgatgatgttaagctgatctcaaacgaggacattgaaaaagtggaacaagtt
gaaacgttcgaagaatataaagatcgagaccaacacttcaagctttattatggccgtgat
atcgagattatgcaggaggccatgaaacgaaggaaaaaagaagacaaactcaacaagaag
catcggaagaaagaaaaaaagcgtaagaccaaaaccataaccaacgaagacggagaagac
gttgaagtcactgacgatgaagccatttccgaacccgaggaagaagaacccgagatcgtt
gagcccgacgacaacatggacgaagacgtcgaagcattgaagcaggccaagcgacacgac
gcgttctccctttgcaaaaagtataagatcacgggtatcgctcagaaatttggcttaaca
gccgagcaatttggacacaatctccacgatggctaccaacgcttcgacgtggaacaagag
gccaatgaacccttagaagtggcagcggagttcaagaatgacaagatatccaatcctcaa
gacatcctagaagctgctaaacatttggtcgccacacaaatcgctcgagatccattggtt
cgaaaggtaactcgagatgctttcttcgagcgagctacaatcaccgccagaccgacaaag
aaaggcatcaaagacattgatgaagatcatgagtgctacgccatgaagtatctgaaagac
aagcctgtgagggatttgaaggatgatcaatggattcgtttgacgcaggcagaagagcag
aagattatgactattgagttaggccaagatctttgctcagtgatgggaaacaagaccttc
ttggaggaggccaaggagctgttcaagtacgacgcctactcgaaatccgtgcaagagtgg
aacaacttacgtggtcagtgcgtggagatcgccttcaaacggatgcttttcccaatgcta
agaaaagagttgcgactcaaactgaacaaagaggccaaggacggaattatacatgcgtgc
cgaaataagctctacgattggatcaaagttggtcgttattctgtgacctttgaggatgaa
gacgaggacgattgggactcgactcatgggtgccgagtcatggccgtcatgtacaatgat
gatccggatgtagcttcctatgctgtttccttgagcacggaaggtgaagtggtggatatt
ctcaaactagatcatttactcaaaagaaagaattcatggaaagagaaggagagccaagag
aagatctccgatttgaaggccctaaaagggtttattcactccaaacgtcctcattgcatt
gtggtgggtgctgtggatcgcaatgccgtcggcatcaagatggacttggaggacgtgatc
aaagatctggtggacggcgaagctcagttccccaatgtgggcgtgttcctcatggacgat
catctagccaaggtgtttgccaactcgcaaagagccgagcaagattttcgagattaccct
gaagttttgagagaagccgtgtctatggctcgacgaatgcaagaccctctgacagaattt
gcccaactcaccggccccgagaacgaaattctttgcctcagataccacaagtatcaagac
ctgttgtcagaagacgagctcttggaagctctcaatgttgaattcatcaatcgtaccaat
gaggttggcgtagatatcaatgaatgtgttgcacacacttacatgggaaatctagtccaa
ttcgttggtggacttggtcccaggaaagcagccgctttgctcaagacactcagacaactc
caatcttctcaacggctagagaaccgtcaacagctggtcaccctttgtcacatgggtccc
aaggtcttgattaattgcgctggattcattaagatcgatacttcgagcttgggcgactcc
gaagtgtacgtagaggtgttggacggatctcgtattcacaacgaagcctacgagtgggct
cgaaagatggccgtagatgcgctggaatatgacgaagaagatggtaatccagcgaatgct
ctagaagagatccttcaagaacctgaaaagctcgccgagctcgatttggaagcattcgct
caagagttggagcggcaaggctttggcaagaaatccatcacactccaagacattcgagct
gaactcacgcacatgtacaaagatcttcgagatgcgtacacccctcccaattctgaagag
atcttcaatatgatcaccaaggaaactccccagacgttcttcattggcaagcttcttcaa
gcccaggtgttctcttttgcatacaaaaaacctcaaggagaagagttggaccaagctgct
cctgttaagggagatcagaacctatggcgttgtcccttctgcggccaagatgactttcct
gagttaactgaggtgtggaatcatttagacgccgacaactgcccgggcaaggctgttgga
gtgaaggttcgtctcgataacgggcttactggtttcatcccgatgaagaacctttccgac
tccaatgtcttgaatccggaggagcgcgtgcgaaaaggtcagaatatattttgtcgcatc
accaaaatccagccagaacgattttccgtggagtgtgtatgcaagtcttccgccctattg
gacaaagaaaatgaatggaaacctcgattagacgactactatgataagcgagccgaaggc
gctgactctgaagaggaaaccaagaagaaagagcagaaacagaggcagacgtacatcaaa
agggtgatcgttcatcccagcttctacaacatcagcttcaaagacgccgaaaaactcatg
gtcaatatggaccagggtgatgtgatcattcgcccgtccagtaaaggcgaggaccatctc
acggtcacgtggaaagttggcgatgacatctaccagcatatcgacgtgcgagaagaaggc
aaagataatgcattttctttgggacgatcactatggataggcaatgaagagttcgaagac
ttggacgagatcattgcccgacacgttaacccaatggctgctcatgctcgagatattctc
acattcaaatattacaaggataccgatggtggcaagcgggaaaaggccgaagagatcctc
aaagtcgacaagcgtgccgcgcccacaaaaatccattacttcctctcggccagtaaggaa
ttccctggcaaattcatgctctcgtatcttccacgcaccaaagccagacatgaatatgtc
accgtcactccggatggcttccggttccgtcaccagaactttgacagtctctcatctctg
atgaaatggttcaaagagcatttccgagaccccattcctggcacccccgggaggagcacg
agccgaacaccttacaatatggccggaactcccggaggaggaatcactccgggggctatg
agtctggctgcgggcacgcctttcaaccccacgcccggtttcggtaacaacgcgagtaca
ccctatacacctagtggacaaaccccgttcatgacgccgcatcaaaccccgggtgcattt
gtcacgccgagacatacgcctcgctcaggtatccccgtgggtggcccaccccatcgatcg
agcggcaacacaccccagggcggcacccctcgtagtggacgccaacctcctatgccgagg
caaggcatgcccccaccgcacggaggtggttacacgccaggtcgtggtccaccacacgga
actccaagtggaacccctgggggtcgtcgacctgcgccttatcccagtccctctggcggt
tacggtagtggtggctacagtcgcggtcaaagcccggccacgggacacccccctcgcgga
ggtcgagatcaagatgcttgggctacagccggtgatgcgtgggccaaaggtgggcgtcgc
actccggccaatacgactcctcgaggttacaccggtagcacgacgccccgttttgatgaa
gcatcaaaccggactccacgatatgaagactccacccaaaatcagcggacaccaagacaa
ggaggctccgggacgcgaacgccccgaggaggagtggattccacacccctatatgacgag
tag
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integrated database retrieval system
