Tigriopus californicus (tidepool copepod): 131887927
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Entry
131887927 CDS
T09700
Name
(RefSeq) structural maintenance of chromosomes protein 5-like
KO
K22803
structural maintenance of chromosomes protein 5
Organism
tcf
Tigriopus californicus (tidepool copepod)
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcf03400
]
131887927
DNA repair and recombination proteins [BR:
tcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
131887927
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
SMC_hinge
AAA_29
AAA_16
AAA_27
ABC_tran
DUF5917
Motif
Other DBs
NCBI-GeneID:
131887927
NCBI-ProteinID:
XP_059092646
LinkDB
All DBs
Position
10:complement(7570932..7574538)
Genome browser
AA seq
1058 aa
AA seq
DB search
MSSAPRPLRSSPNESPPTCLGSIQFIRLQDFMSYHDVSVRPGPGFNVVIGPNGSGKSSIV
SAITLGLGGDLSELKRQRSITDFVNTTTDADCARITIELYRDHERVYKVQCEIKRSGQIV
FHLDEVLVTQAKVKNLVEKLSIQTNNLCQFLPQDVVRDFPDMPSHEKLFNTIRAVGDGRT
NELLQELKDEQDKLESLQQMLQIKVGTFTELERKWESSTVVRNVIRQRQRLQNSLNLLGI
KEKFFLFKQLRLDIRDLEKKIIDSKEKIDSLAHSKAELDQKLETHHQAKTNLELTMVEPK
DVIANYKAFMSSSPSEILNDKIKSITNNLNSLTSRYESKAQQIEQLEEEIQSATQQIDSS
KTQGKLESEYETLNKQLKAKQCEITAKEHLHSVALAELNALDRQIQRLSSERSRLHSEEN
QKMNILKQRNPDVFQGLEWLRANRDRFNHTIHDPIMVCLRVLGPPENALYLERLIGAQDL
QAFVCEDPSDANKLMNILRSEKKLSRINVITSSNTSTSNCEPIPCSIQGFKGFVSDMMDC
PPAVRTYLCSKKQLNRIPVFTAGSDSKHVGQKYFRYFVDRKLFVKRQGRYSNSESVSIEN
CANDEVRFFPSATVDDNELQSNERNIAWARKEQTKKKWEAESLTNELKAVNSAHDRISNH
MADKKHEIERLKGLQWKIKDLEGQVDVLKKSADIQSLRERSLNEREKALKQISVVHQEML
AFTNKYSMAVLTLKFAGIQMEQLEKSSSQERTAHADIEADHNAMTTMLKDLETKKVTNTQ
AFQKIHREVQAHITFDKKRVRLKPEFEKSLQEVCPGEFTSHSEARARMETLEKDLRDLPA
ISQRDEDDAKLSERKFKEAKDAIQDMKAQISRHEKDAIVRGQTISRRIQELVSKIDSRFS
AMMADLGHAGCIKLDQGEGPSDFKSFGLDIMVNFAGAKGNMEALSGSVQSGGEKSVSTAV
FMMALQELTQVPFRCVDEINQGMDEVNERLIWKMLLTTANRYTAQYMYFSPKFPRELEFT
PDIKAVFCINGALRVDLPNHFHLSNILQRMKKKRKIVT
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgcgccacgccctctccggtcgtcgcccaatgagtcgcctccaacctgtcta
ggatcgatccagttcatccgattgcaagatttcatgtcctaccacgatgtaagcgtgcga
cccggtccaggatttaacgtggtcattggacccaatggcagcggcaagagctcgattgta
tcggccatcacgttaggtctgggtggagatctgagcgaattgaagcgacagcgatcgatc
acggatttcgtgaataccaccactgatgcggattgcgcccggatcaccatcgagttgtat
cgagatcatgagcgcgtgtacaaggttcaatgcgagatcaagcgctctgggcagatcgtt
tttcatctggacgaggtcctcgtcacgcaagccaaagtcaagaacttggtggagaagctt
agcattcaaaccaacaacttgtgccagttcttgccgcaggatgtggtgcgagatttcccg
gacatgccctcgcatgagaagctattcaacaccattcgagcagtaggtgatgggcggacc
aatgaactccttcaggagctgaaagacgaacaagacaagctggagagtctgcaacaaatg
ctccagatcaaagtagggacttttaccgagctggagcggaaatgggagagctccactgtg
gtccgaaatgtcattcgtcaacgccaacgcctacagaatagcttgaacttgttgggcatc
aaggaaaaattctttctcttcaagcaactgcgactggatattcgggacctggagaagaag
ataatcgattcaaaagaaaagattgacagtctagctcactccaaggcggagctggatcaa
aagctcgagactcatcatcaggctaagaccaacctggaattgaccatggtcgagcccaaa
gacgtaattgccaactacaaggccttcatgagtagttccccgagtgagatactcaacgac
aaaatcaagtccatcacgaataatctgaactcattaacctctcgatacgaaagcaaagct
caacagattgagcaactcgaggaagaaattcagtcggccacccaacaaattgattcttcc
aagactcaaggcaaattggaatctgaatacgaaaccctgaacaaacaactcaaggccaag
caatgtgaaataacggccaaagagcatcttcactccgtggcattagccgaattgaatgct
ttggaccgccaaatacaacgtttatcgtccgagcgaagccgactccactccgaggagaat
caaaaaatgaacattctgaaacagagaaaccctgacgtcttccaagggctggaatggctt
cgggcaaaccgtgaccgctttaatcacaccattcatgatcccatcatggtttgcttgcgc
gttctgggtcctccagaaaacgccctttatttagagcgacttattggggcccaagacttg
caggccttcgtttgcgaagatccttccgatgccaacaagctcatgaatattctaaggagt
gagaagaaactgagccgaatcaacgtcatcactagtagcaacactagcacgtcaaattgt
gagcccatcccctgttccattcaaggtttcaaaggcttcgtttccgatatgatggattgc
ccaccagcagtgaggacctatctgtgctccaaaaagcaactcaatcgaatcccagtgttt
acggctggtagtgatagcaagcacgtgggtcaaaagtacttccgttatttcgtggatcgg
aagcttttcgtgaaacgtcaaggccgttattccaactctgaatccgtgtccattgagaat
tgtgccaatgacgaggttcgtttcttcccgtcggccacggttgatgataacgagcttcag
agcaatgaacgaaacattgcgtgggctagaaaagaacagaccaaaaagaagtgggaagcc
gaaagtttgaccaatgaactgaaagctgtcaacagtgctcatgatcgaatatcgaatcac
atggcagataagaagcacgagattgaaagactcaagggcttgcaatggaagatcaaggat
ttggaggggcaagtcgacgttctgaagaaatcggcagatattcagagccttcgagaacga
agtctgaatgaaagagagaaggccttgaaacaaattagtgtggtacatcaagaaatgttg
gcattcacaaataagtactctatggcagtgttgaccctcaagtttgctggcatccaaatg
gagcagttagagaaatcaagcagtcaagagagaactgcacacgcggacatagaggcagat
cacaacgcaatgaccacgatgctgaaggacctggagacgaagaaagtgacaaatacccaa
gcctttcaaaagatccacagggaagttcaggcccatatcactttcgacaagaaacgagtg
cgcctgaagccagaattcgaaaagagcctgcaagaagtctgtccaggtgagttcacctcc
cattctgaagcccgtgcccgaatggaaaccttagagaaagacctccgagaccttccggcc
atatcccaacgggacgaggacgatgctaagttgtccgagcggaagttcaaggaggccaaa
gatgccattcaagatatgaaggctcaaatctctcggcatgaaaaggatgccatcgtgcgc
ggtcaaaccatttcccgtcgaattcaagaactcgtctcgaaaatcgactctcgattctcg
gctatgatggccgatttgggacacgccggttgcatcaagctcgatcaaggcgagggccca
tctgatttcaagtcatttgggctggatatcatggtgaattttgccggtgccaaaggaaac
atggaggctctttcgggatccgtccaatccggcggtgaaaagtcggtcagcacggccgtg
ttcatgatggccttacaagaactgacgcaagtaccttttcgatgtgttgacgaaatcaat
caaggaatggatgaagtgaatgaacgtctcatttggaagatgcttttgaccacggctaat
cgctacactgcccaatacatgtatttttctcccaagttccctcgagaactcgagtttacc
ccggatatcaaggcggtgttttgcatcaatggagccctaagagtggatctcccaaatcac
ttccatctttccaatattctgcaacgcatgaagaagaagcgcaaaatcgttacataa
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